RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CHMP3Q9Y3E7 222 aa14.4□□□□□ -0.1
PTPN4-201ENST00000263708 CNKSR2Q8WXI2 1034 aa14.39□□□□□ -0.11
PTPN4-201ENST00000263708 GORABQ5T7V8 394 aa14.38□□□□□ -0.11
PTPN4-201ENST00000263708 GZF1Q9H116 711 aaPredicted RBP14.38□□□□□ -0.11
PTPN4-201ENST00000263708 CCDC9Q9Y3X0 531 aaKnown RBP14.38□□□□□ -0.11
PTPN4-201ENST00000263708 HTATSF1O43719 755 aaKnown RBP14.37□□□□□ -0.11
PTPN4-201ENST00000263708 SETQ01105 290 aaPredicted RBP14.37□□□□□ -0.11
PTPN4-201ENST00000263708 PAK3O75914 559 aaPredicted RBP14.36□□□□□ -0.11
PTPN4-201ENST00000263708 PES1O00541 588 aaKnown RBP14.35□□□□□ -0.11
PTPN4-201ENST00000263708 TAF7LQ5H9L4 462 aa14.35□□□□□ -0.11
PTPN4-201ENST00000263708 MARCH6O60337 910 aa14.35□□□□□ -0.11
PTPN4-201ENST00000263708 TRHP20396 242 aaPredicted RBP14.35□□□□□ -0.11
PTPN4-201ENST00000263708 CCDC34Q96HJ3 373 aa14.34□□□□□ -0.11
PTPN4-201ENST00000263708 CSB-PGBD3P0DP91 1061 aa14.34□□□□□ -0.11
PTPN4-201ENST00000263708 SRPK2P78362 688 aaKnown RBP14.33□□□□□ -0.11
PTPN4-201ENST00000263708 USP35Q9P2H5 1018 aa14.33□□□□□ -0.11
PTPN4-201ENST00000263708 CALRP27797 417 aaKnown RBP14.33□□□□□ -0.11
PTPN4-201ENST00000263708 TPM3P06753 285 aa14.33□□□□□ -0.12
PTPN4-201ENST00000263708 SYAP1Q96A49 352 aaPredicted RBP14.32□□□□□ -0.12
PTPN4-201ENST00000263708 SAFB2Q14151 953 aaKnown RBP eCLIP14.32□□□□□ -0.12
PTPN4-201ENST00000263708 CFAP44Q96MT7 982 aa14.32□□□□□ -0.12
PTPN4-201ENST00000263708 GBP4Q96PP9 640 aa14.32□□□□□ -0.12
PTPN4-201ENST00000263708 MLECQ14165 292 aa14.32□□□□□ -0.12
PTPN4-201ENST00000263708 PLEKHD1A6NEE1 506 aa14.31□□□□□ -0.12
PTPN4-201ENST00000263708 GPATCH3Q96I76 525 aa14.31□□□□□ -0.12
PTPN4-201ENST00000263708 B4GALNT3Q6L9W6 998 aa14.31□□□□□ -0.12
PTPN4-201ENST00000263708 PPP4R2Q9NY27 417 aa14.3□□□□□ -0.12
PTPN4-201ENST00000263708 TCEAL9Q9UHQ7 104 aa14.3□□□□□ -0.12
PTPN4-201ENST00000263708 PTMSP20962 102 aa14.29□□□□□ -0.12
PTPN4-201ENST00000263708 TRIM6-TRIM34B2RNG4 842 aa14.28□□□□□ -0.12
PTPN4-201ENST00000263708 FRAT2O75474 233 aaPredicted RBP14.28□□□□□ -0.12
PTPN4-201ENST00000263708 TPD52L1Q16890 204 aaPredicted RBP14.28□□□□□ -0.12
PTPN4-201ENST00000263708 TOMM22Q9NS69 142 aa14.28□□□□□ -0.12
PTPN4-201ENST00000263708 NOL8Q76FK4 1167 aaKnown RBP14.26□□□□□ -0.13
PTPN4-201ENST00000263708 DEKP35659 375 aaKnown RBP14.26□□□□□ -0.13
PTPN4-201ENST00000263708 CCAR2Q8N163 923 aaKnown RBP14.26□□□□□ -0.13
PTPN4-201ENST00000263708 MORC1Q86VD1 984 aa14.25□□□□□ -0.13
PTPN4-201ENST00000263708 ITPRIPQ8IWB1 547 aa14.24□□□□□ -0.13
PTPN4-201ENST00000263708 TSR1Q2NL82 804 aaKnown RBP14.24□□□□□ -0.13
PTPN4-201ENST00000263708 RSF1Q96T23 1441 aaPredicted RBP14.24□□□□□ -0.13
PTPN4-201ENST00000263708 RAD21O60216 631 aa14.23□□□□□ -0.13
PTPN4-201ENST00000263708 SLKQ9H2G2 1235 aaPredicted RBP14.23□□□□□ -0.13
PTPN4-201ENST00000263708 CFDP1Q9UEE9 299 aaPredicted RBP14.23□□□□□ -0.13
PTPN4-201ENST00000263708 CSPP1Q1MSJ5 1256 aa14.23□□□□□ -0.13
PTPN4-201ENST00000263708 HDGFP51858 240 aaKnown RBP14.22□□□□□ -0.13
PTPN4-201ENST00000263708 STK26Q9P289 416 aa14.22□□□□□ -0.13
PTPN4-201ENST00000263708 RRP12Q5JTH9 1297 aaKnown RBP14.22□□□□□ -0.13
PTPN4-201ENST00000263708 IPO8O15397 1037 aaKnown RBP14.21□□□□□ -0.14
PTPN4-201ENST00000263708 GTF2E1P29083 439 aaPredicted RBP14.21□□□□□ -0.14
PTPN4-201ENST00000263708 TPM2P07951 284 aa14.2□□□□□ -0.14
PTPN4-201ENST00000263708 CTDP1Q9Y5B0 961 aaPredicted RBP14.2□□□□□ -0.14
PTPN4-201ENST00000263708 ZCCHC6Q5VYS8 1495 aaKnown RBP14.2□□□□□ -0.14
PTPN4-201ENST00000263708 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.2□□□□□ -0.142e-6■■■■■ 96.1
PTPN4-201ENST00000263708 KANK1Q14678 1352 aa14.2□□□□□ -0.14
PTPN4-201ENST00000263708 FOXD4L1Q9NU39 408 aa14.19□□□□□ -0.14
PTPN4-201ENST00000263708 TMF1P82094 1093 aa14.19□□□□□ -0.14
PTPN4-201ENST00000263708 SF3A1Q15459 793 aaKnown RBP14.19□□□□□ -0.14
PTPN4-201ENST00000263708 FOXD4L5Q5VV16 416 aaPredicted RBP14.19□□□□□ -0.14
PTPN4-201ENST00000263708 FOXD4L4Q8WXT5 416 aaPredicted RBP14.19□□□□□ -0.14
PTPN4-201ENST00000263708 TRIM34Q9BYJ4 488 aa14.19□□□□□ -0.14
PTPN4-201ENST00000263708 CCDC70Q6NSX1 233 aa14.18□□□□□ -0.14
PTPN4-201ENST00000263708 PHF14O94880 888 aa14.17□□□□□ -0.14
PTPN4-201ENST00000263708 CWC22Q9HCG8 908 aaKnown RBP14.17□□□□□ -0.14
PTPN4-201ENST00000263708 MFAP1P55081 439 aaKnown RBP14.17□□□□□ -0.14
PTPN4-201ENST00000263708 SPAG9O60271 1321 aaKnown RBP14.16□□□□□ -0.14
PTPN4-201ENST00000263708 MSH5O43196 834 aa14.16□□□□□ -0.14
PTPN4-201ENST00000263708 KIF16BQ96L93 1317 aa14.16□□□□□ -0.14
PTPN4-201ENST00000263708 H3BQV1 296 aa14.16□□□□□ -0.14
PTPN4-201ENST00000263708 IFFO2Q5TF58 517 aa14.16□□□□□ -0.14
PTPN4-201ENST00000263708 PCMTD1Q96MG8 357 aaPredicted RBP14.16□□□□□ -0.14
PTPN4-201ENST00000263708 HDGFL2Q7Z4V5 671 aaPredicted RBP14.15□□□□□ -0.14
PTPN4-201ENST00000263708 STK31Q9BXU1 1019 aa14.15□□□□□ -0.14
PTPN4-201ENST00000263708 SLC4A10Q6U841 1118 aa14.14□□□□□ -0.15
PTPN4-201ENST00000263708 GOLGA6L3A6NEY3 463 aa14.14□□□□□ -0.15
PTPN4-201ENST00000263708 TPM1P09493 284 aa14.14□□□□□ -0.15
PTPN4-201ENST00000263708 CALD1Q05682 793 aaKnown RBP14.14□□□□□ -0.15
PTPN4-201ENST00000263708 AKAP17AQ02040 695 aaKnown RBP14.14□□□□□ -0.15
PTPN4-201ENST00000263708 DCAF11Q8TEB1 546 aa14.13□□□□□ -0.15
PTPN4-201ENST00000263708 CLIP1P30622 1438 aa14.12□□□□□ -0.15
PTPN4-201ENST00000263708 FBXW7Q969H0 707 aa14.1□□□□□ -0.15
PTPN4-201ENST00000263708 RWDD1Q9H446 243 aaPredicted RBP14.1□□□□□ -0.15
PTPN4-201ENST00000263708 GOLGA6L19H0YKK7 550 aa14.1□□□□□ -0.15
PTPN4-201ENST00000263708 GPS2Q13227 327 aa14.1□□□□□ -0.15
PTPN4-201ENST00000263708 U2AF1L5P0DN76 240 aaPredicted RBP14.09□□□□□ -0.15
PTPN4-201ENST00000263708 U2AF1Q01081 240 aaKnown RBP eCLIP14.09□□□□□ -0.15
PTPN4-201ENST00000263708 KIF3AQ9Y496 699 aa14.09□□□□□ -0.15
PTPN4-201ENST00000263708 ZNF592Q92610 1267 aa14.08□□□□□ -0.16
PTPN4-201ENST00000263708 DCAF1Q9Y4B6 1507 aa14.08□□□□□ -0.16
PTPN4-201ENST00000263708 NOL10Q9BSC4 688 aaKnown RBP14.08□□□□□ -0.16
PTPN4-201ENST00000263708 CCDC43Q96MW1 224 aaKnown RBP14.08□□□□□ -0.16
PTPN4-201ENST00000263708 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.08□□□□□ -0.16
PTPN4-201ENST00000263708 HMMRO75330 724 aa14.08□□□□□ -0.16
PTPN4-201ENST00000263708 FOXD4L6Q3SYB3 417 aaPredicted RBP14.08□□□□□ -0.16
PTPN4-201ENST00000263708 FOXD4L3Q6VB84 417 aaPredicted RBP14.08□□□□□ -0.16
PTPN4-201ENST00000263708 AMOTL1Q8IY63 956 aa14.08□□□□□ -0.16
PTPN4-201ENST00000263708 ODF2Q5BJF6 829 aa14.07□□□□□ -0.16
PTPN4-201ENST00000263708 MCTP1Q6DN14 999 aa14.07□□□□□ -0.16
PTPN4-201ENST00000263708 FAM184AQ8NB25 1140 aa14.07□□□□□ -0.16
PTPN4-201ENST00000263708 ZNF771Q7L3S4 317 aaPredicted RBP14.07□□□□□ -0.16
PTPN4-201ENST00000263708 SAMD1Q6SPF0 538 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms