RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	ACO2	P39533	789 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	AXL1	P40851	1208 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	CTK3	P46963	296 aa	Predicted RBP	4.38	□□□□□ -1.71
SSH4	YKL124W	PBP1	P53297	722 aa	Known RBP	4.38	□□□□□ -1.71
SSH4	YKL124W	YGR266W	P53326	701 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	TIM10	P87108	93 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	SLT2	Q00772	484 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	SNP1	Q00916	300 aa	Predicted RBP	4.38	□□□□□ -1.71
SSH4	YKL124W	SPP2	Q02521	185 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	RPN9	Q04062	393 aa	Known RBP	4.38	□□□□□ -1.71
SSH4	YKL124W	RCO1	Q04779	684 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	ATG26	Q06321	1198 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	GRS2	Q06817	618 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	YPR097W	Q06839	1073 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	YOR352W	Q08816	343 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	YOR389W	Q08912	624 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	RMP1	Q12530	201 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	LSO1	Q3E827	93 aa		4.38	□□□□□ -1.71
SSH4	YKL124W	BRR1	Q99177	341 aa	Predicted RBP	4.38	□□□□□ -1.71
SSH4	YKL124W	AAC3	P18238	307 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	ATP12	P22135	325 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	RSC6	P25632	483 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	CWP1	P28319	239 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	MRPL9	P31334	269 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	NTG1	P31378	399 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	WBP1	P33767	430 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	YPT52	P36018	234 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	MUD2	P36084	527 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	PEX32	P38292	413 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	YBR238C	P38330	731 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	DED81	P38707	554 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	HIS6	P40545	261 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	SSU1	P41930	458 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	IRC6	P43615	237 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	YJR098C	P47139	656 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	ACS2	P52910	683 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	RRN5	Q02983	363 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	ARX1	Q03862	593 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	ADE13	Q05911	482 aa	Known RBP	4.37	□□□□□ -1.71
SSH4	YKL124W	SKM1	Q12469	655 aa		4.37	□□□□□ -1.71
SSH4	YKL124W	CSF1	Q12150	2958 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	SWI5	P08153	709 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	ERG20	P08524	352 aa	Known RBP	4.36	□□□□□ -1.71
SSH4	YKL124W	MSS18	P08593	268 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	GPA2	P10823	449 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	VPS34	P22543	875 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	RIM1	P32445	135 aa	Known RBP	4.36	□□□□□ -1.71
SSH4	YKL124W	TIP20	P33891	701 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	RPF2	P36160	344 aa	Known RBP	4.36	□□□□□ -1.71
SSH4	YKL124W	REI1	P38344	393 aa	Predicted RBP	4.36	□□□□□ -1.71
SSH4	YKL124W	SSN3	P39073	555 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	YEL073C	P39974	107 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	LSM5	P40089	93 aa	Known RBP	4.36	□□□□□ -1.71
SSH4	YKL124W	PKP1	P40530	394 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	ZIM17	P42844	174 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	HXT16	P47185	567 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	RBG2	P53295	368 aa	Known RBP	4.36	□□□□□ -1.71
SSH4	YKL124W	MRPL19	P53875	158 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	HXT15	P54854	567 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	RHO3	Q00245	231 aa	Known RBP	4.36	□□□□□ -1.71
SSH4	YKL124W	OSH6	Q02201	448 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	YMR027W	Q04371	470 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	CDC123	Q05791	360 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	ACM1	Q08981	209 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	ADF1	Q2V2Q1	113 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	YIL046W-A	Q3E7Z4	54 aa		4.36	□□□□□ -1.71
SSH4	YKL124W	TEF1	P02994	458 aa	Known RBP	4.35	□□□□□ -1.71
SSH4	YKL124W	RIP1	P08067	215 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	AMD1	P15274	810 aa	Known RBP	4.35	□□□□□ -1.71
SSH4	YKL124W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	4.35	□□□□□ -1.71	not detected
SSH4	YKL124W	CBF1	P17106	351 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	TEC1	P18412	486 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	DAL82	P21705	255 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	KAR4	P25583	335 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	YCR099C	P25657	155 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	MKK2	P32491	506 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	NPL6	P32832	435 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	SPC29	P33419	253 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	BET3	P36149	193 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	BAP2	P38084	609 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	ARA1	P38115	344 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	OLA1	P38219	394 aa	Known RBP	4.35	□□□□□ -1.71
SSH4	YKL124W	PIC2	P40035	300 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	SEC28	P40509	296 aa	Known RBP	4.35	□□□□□ -1.71
SSH4	YKL124W	INA22	P40576	216 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	YNL320W	P42840	284 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	YFL012W	P43580	148 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	MAD3	P47074	515 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	YML119W	Q03208	357 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	YDR444W	Q04093	687 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	RRN11	Q04712	507 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	MRL1	Q06815	381 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	SYT1	Q06836	1226 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	NOP6	Q07623	225 aa	Known RBP	4.35	□□□□□ -1.71
SSH4	YKL124W	TAF3	Q12297	353 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	CMR1	Q12510	522 aa	Known RBP	4.35	□□□□□ -1.71
SSH4	YKL124W	IRA1	P18963	3092 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	HEM15	P16622	393 aa		4.35	□□□□□ -1.71
SSH4	YKL124W	THR1	P17423	357 aa	Known RBP	4.35	□□□□□ -1.71
SSH4	YKL124W	STE4	P18851	423 aa		4.35	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 32.9 ms