RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 V9GY48 417 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 DOCK5Q9H7D0 1870 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 CPLX1O14810 134 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 SPRYD3Q8NCJ5 442 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 SLAIN1Q8ND83 568 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 MAML3Q96JK9 1138 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 LLPHQ9BRT6 129 aaKnown RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 FOXD4L1Q9NU39 408 aa17.32■□□□□ 0.36
TRIM28-207ENST00000597136 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 DDX49Q9Y6V7 483 aaKnown RBP17.32■□□□□ 0.36
TRIM28-207ENST00000597136 LRRC37A2A6NM11 1700 aa17.31■□□□□ 0.36
TRIM28-207ENST00000597136 ABCB11O95342 1321 aa17.31■□□□□ 0.36
TRIM28-207ENST00000597136 IGHA2P01877 340 aa17.31■□□□□ 0.36
TRIM28-207ENST00000597136 SLC30A10Q6XR72 485 aa17.31■□□□□ 0.36
TRIM28-207ENST00000597136 NSUN7Q8NE18 718 aaKnown RBP17.31■□□□□ 0.36
TRIM28-207ENST00000597136 PHKBQ93100 1093 aa17.31■□□□□ 0.36
TRIM28-207ENST00000597136 ARMC5Q96C12 935 aa17.31■□□□□ 0.36
TRIM28-207ENST00000597136 ASTN1O14525 1302 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 PTPDC1A2A3K4 754 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 SOWAHBA6NEL2 793 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 INHAP05111 366 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 IFNAR1P17181 557 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 CYP2C19P33261 490 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 PRAMEF19Q5SWL8 479 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 CPLX2Q6PUV4 134 aaKnown RBP17.3■□□□□ 0.36
TRIM28-207ENST00000597136 FAM133AQ8N9E0 248 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 GPKOWQ92917 476 aaPredicted RBP eCLIP17.3■□□□□ 0.36
TRIM28-207ENST00000597136 ZNF333Q96JL9 665 aa17.3■□□□□ 0.36
TRIM28-207ENST00000597136 POTEB2H3BUK9 544 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 JAK2O60674 1132 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 CDKL5O76039 1030 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 CALML3P27482 149 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 RPS6P62753 249 aaKnown RBP17.29■□□□□ 0.36
TRIM28-207ENST00000597136 CACNB2Q08289 660 aaPredicted RBP17.29■□□□□ 0.36
TRIM28-207ENST00000597136 RNF207Q6ZRF8 634 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 SMARCC2Q8TAQ2 1214 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 PNMA2Q9UL42 364 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 MRPL11Q9Y3B7 192 aaKnown RBP17.29■□□□□ 0.36
TRIM28-207ENST00000597136 PFASO15067 1338 aa17.29■□□□□ 0.36
TRIM28-207ENST00000597136 HMGCRP04035 888 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 UNC93B1Q9H1C4 597 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 SLC5A4Q9NY91 659 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 COL20A1Q9P218 1284 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 SEC63Q9UGP8 760 aaKnown RBP17.28■□□□□ 0.36
TRIM28-207ENST00000597136 SMC3Q9UQE7 1217 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 DIS3Q9Y2L1 958 aaKnown RBP17.28■□□□□ 0.36
TRIM28-207ENST00000597136 DNAH12Q6ZR08 3092 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 CCDC85CA6NKD9 419 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 CFBP00751 764 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 PKN1Q16512 942 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 OLFML2BQ68BL8 750 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 TYW1BQ6NUM6 668 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 TRPV1Q8NER1 839 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 TINF2Q9BSI4 451 aa17.28■□□□□ 0.36
TRIM28-207ENST00000597136 MKI67P46013 3256 aaKnown RBP17.27■□□□□ 0.36
TRIM28-207ENST00000597136 CCL5P13501 91 aa17.27■□□□□ 0.35
TRIM28-207ENST00000597136 CCND3P30281 292 aaPredicted RBP17.27■□□□□ 0.35
TRIM28-207ENST00000597136 HOXA13P31271 388 aaPredicted RBP17.27■□□□□ 0.35
TRIM28-207ENST00000597136 HMGN5P82970 282 aaKnown RBP17.27■□□□□ 0.35
TRIM28-207ENST00000597136 SSRP1Q08945 709 aaKnown RBP17.27■□□□□ 0.35
TRIM28-207ENST00000597136 MAP3K21Q5TCX8 1036 aa17.27■□□□□ 0.35
TRIM28-207ENST00000597136 WWC2Q6AWC2 1192 aa17.27■□□□□ 0.35
TRIM28-207ENST00000597136 RGS22Q8NE09 1264 aa17.27■□□□□ 0.35
TRIM28-207ENST00000597136 TAAR1Q96RJ0 339 aa17.27■□□□□ 0.35
TRIM28-207ENST00000597136 SLC26A6Q9BXS9 759 aa17.27■□□□□ 0.35
TRIM28-207ENST00000597136 PRPF3O43395 683 aaKnown RBP17.26■□□□□ 0.35
TRIM28-207ENST00000597136 SNAI1O95863 264 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-207ENST00000597136 PRKAR2AP13861 404 aaKnown RBP17.26■□□□□ 0.35
TRIM28-207ENST00000597136 FDPSP14324 419 aaKnown RBP17.26■□□□□ 0.35
TRIM28-207ENST00000597136 GJB2P29033 226 aa17.26■□□□□ 0.35
TRIM28-207ENST00000597136 HEATR3Q7Z4Q2 680 aa17.26■□□□□ 0.35
TRIM28-207ENST00000597136 TRMT44Q8IYL2 757 aaKnown RBP17.26■□□□□ 0.35
TRIM28-207ENST00000597136 SYTL5Q8TDW5 730 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-207ENST00000597136 ORC3Q9UBD5 711 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-207ENST00000597136 UBXN2AP68543 259 aa17.25■□□□□ 0.35
TRIM28-207ENST00000597136 MFSD14CQ5VZR4 134 aa17.25■□□□□ 0.35
TRIM28-207ENST00000597136 TRIM22Q8IYM9 498 aa17.25■□□□□ 0.35
TRIM28-207ENST00000597136 SHISA4Q96DD7 197 aa17.25■□□□□ 0.35
TRIM28-207ENST00000597136 RNF26Q9BY78 433 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-207ENST00000597136 RNF208Q9H0X6 261 aa17.25■□□□□ 0.35
TRIM28-207ENST00000597136 STK36Q9NRP7 1315 aa17.25■□□□□ 0.35
TRIM28-207ENST00000597136 ADAMTS3O15072 1205 aa17.24■□□□□ 0.35
TRIM28-207ENST00000597136 HSD17B4P51659 736 aa17.24■□□□□ 0.35
TRIM28-207ENST00000597136 PFKFB3Q16875 520 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-207ENST00000597136 USP17L6PQ6QN14 398 aa17.24■□□□□ 0.35
TRIM28-207ENST00000597136 MAMDC4Q6UXC1 1216 aa17.24■□□□□ 0.35
TRIM28-207ENST00000597136 MCF2L2Q86YR7 1114 aa17.24■□□□□ 0.35
TRIM28-207ENST00000597136 POTEFA5A3E0 1075 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 STXBP3O00186 592 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 SCG2P13521 617 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 ALDH5A1P51649 535 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-207ENST00000597136 AKAP17AQ02040 695 aaKnown RBP17.23■□□□□ 0.35
TRIM28-207ENST00000597136 GHRHRQ02643 423 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 TRAF1Q13077 416 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 ARMCX2Q7L311 632 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 ZNF467Q7Z7K2 595 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-207ENST00000597136 AIFM3Q96NN9 605 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 RPTORQ8N122 1335 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 WDR81Q562E7 1941 aa17.23■□□□□ 0.35
TRIM28-207ENST00000597136 MEIS2O14770 477 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms