RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 RASEFQ8IZ41 740 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 MYL10Q9BUA6 226 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 SPZ1Q9BXG8 430 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 UPF3AQ9H1J1 476 aaKnown RBP18.82■□□□□ 0.6
TRIM28-206ENST00000595974 SPC25Q9HBM1 224 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 PHF24Q9UPV7 400 aa18.82■□□□□ 0.6
TRIM28-206ENST00000595974 B4DLN1 442 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 ADCY6O43306 1168 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 EPB41L2O43491 1005 aaKnown RBP18.81■□□□□ 0.6
TRIM28-206ENST00000595974 CYTH3O43739 400 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 HMGB1P09429 215 aaKnown RBP18.81■□□□□ 0.6
TRIM28-206ENST00000595974 EDNRBP24530 442 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 CST5P28325 142 aaPredicted RBP18.81■□□□□ 0.6
TRIM28-206ENST00000595974 SMARCA1P28370 1054 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 HSPA4P34932 840 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 GNAQP50148 359 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 MRPL12P52815 198 aaKnown RBP18.81■□□□□ 0.6
TRIM28-206ENST00000595974 GHRHRQ02643 423 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 DHX32Q7L7V1 743 aaKnown RBP18.81■□□□□ 0.6
TRIM28-206ENST00000595974 HOMER1Q86YM7 354 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 KCNB2Q92953 911 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 PIGSQ96S52 555 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 LZTS2Q9BRK4 669 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 TSEN34Q9BSV6 310 aaKnown RBP18.81■□□□□ 0.6
TRIM28-206ENST00000595974 LRRC2Q9BYS8 371 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 SLC12A7Q9Y666 1083 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 TRIOBPQ9H2D6 2365 aa18.81■□□□□ 0.6
TRIM28-206ENST00000595974 PNMA6FA0A0J9YX94 578 aa18.8■□□□□ 0.6
TRIM28-206ENST00000595974 PPP1R11O60927 126 aaPredicted RBP18.8■□□□□ 0.6
TRIM28-206ENST00000595974 ADCYAP1R1P41586 468 aa18.8■□□□□ 0.6
TRIM28-206ENST00000595974 GJA9P57773 515 aa18.8■□□□□ 0.6
TRIM28-206ENST00000595974 TNFAIP2Q03169 654 aa18.8■□□□□ 0.6
TRIM28-206ENST00000595974 ADCK5Q3MIX3 580 aa18.8■□□□□ 0.6
TRIM28-206ENST00000595974 KLHDC9Q8NEP7 349 aa18.8■□□□□ 0.6
TRIM28-206ENST00000595974 PCDHA1Q9Y5I3 950 aa18.8■□□□□ 0.6
TRIM28-206ENST00000595974 DDX49Q9Y6V7 483 aaKnown RBP18.8■□□□□ 0.6
TRIM28-206ENST00000595974 MOXD2PA6NHM9 499 aa18.79■□□□□ 0.6
TRIM28-206ENST00000595974 C6orf222P0C671 652 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-206ENST00000595974 ATN1P54259 1190 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-206ENST00000595974 EXOSC10Q01780 885 aaKnown RBP18.79■□□□□ 0.6
TRIM28-206ENST00000595974 PDE4DQ08499 809 aa18.79■□□□□ 0.6
TRIM28-206ENST00000595974 SNX17Q15036 470 aa18.79■□□□□ 0.6
TRIM28-206ENST00000595974 IQSEC1Q6DN90 963 aa18.79■□□□□ 0.6
TRIM28-206ENST00000595974 TAPT1Q6NXT6 567 aa18.79■□□□□ 0.6
TRIM28-206ENST00000595974 EEPD1Q7L9B9 569 aa18.79■□□□□ 0.6
TRIM28-206ENST00000595974 SAMD3Q8N6K7 520 aa18.79■□□□□ 0.6
TRIM28-206ENST00000595974 SYTL5Q8TDW5 730 aaPredicted RBP18.79■□□□□ 0.6
TRIM28-206ENST00000595974 MAP3K20Q9NYL2 800 aaKnown RBP18.79■□□□□ 0.6
TRIM28-206ENST00000595974 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-206ENST00000595974 OPLAHO14841 1288 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 HSD17B4P51659 736 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 RTP1P59025 263 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 NKX3-2P78367 333 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 C1orf53Q5VUE5 145 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 CCSAPQ6IQ19 270 aaPredicted RBP18.78■□□□□ 0.6
TRIM28-206ENST00000595974 APOA5Q6Q788 366 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 SLC39A5Q6ZMH5 540 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 SYNE3Q6ZMZ3 975 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 TLK2Q86UE8 772 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 PCSK9Q8NBP7 692 aaKnown RBP18.78■□□□□ 0.6
TRIM28-206ENST00000595974 NSUN6Q8TEA1 469 aaKnown RBP18.78■□□□□ 0.6
TRIM28-206ENST00000595974 TBC1D5Q92609 795 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 FERMT2Q96AC1 680 aa18.78■□□□□ 0.6
TRIM28-206ENST00000595974 RRP36Q96EU6 259 aaKnown RBP18.78■□□□□ 0.6
TRIM28-206ENST00000595974 GNEQ9Y223 722 aaKnown RBP18.78■□□□□ 0.6
TRIM28-206ENST00000595974 LTBP2Q14767 1821 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 RANBP2P49792 3224 aaKnown RBP18.77■□□□□ 0.6
TRIM28-206ENST00000595974 A0A1W2PQ45 241 aaPredicted RBP18.77■□□□□ 0.6
TRIM28-206ENST00000595974 A0A1W2PQY0 241 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 MYADML2A6NDP7 307 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 CFBP00751 764 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 RXRAP19793 462 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 ACLYP53396 1101 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 NOL8Q76FK4 1167 aaKnown RBP18.77■□□□□ 0.6
TRIM28-206ENST00000595974 MICU3Q86XE3 530 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 TCEANC2Q96MN5 208 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 PDGFCQ9NRA1 345 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 COL20A1Q9P218 1284 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 SEC63Q9UGP8 760 aaKnown RBP18.77■□□□□ 0.6
TRIM28-206ENST00000595974 ZMYND8Q9ULU4 1186 aaPredicted RBP18.77■□□□□ 0.6
TRIM28-206ENST00000595974 Q9Y3F1 56 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 SNX14Q9Y5W7 946 aa18.77■□□□□ 0.6
TRIM28-206ENST00000595974 RBM47A0AV96 593 aaKnown RBP18.76■□□□□ 0.59
TRIM28-206ENST00000595974 PLEKHA8P1O95397 391 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 SMPD1P17405 629 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 KCNA10Q16322 511 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 DUSP28Q4G0W2 176 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 CHRDL2Q6WN34 429 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 FANCBQ8NB91 859 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 JAKMIP1Q96N16 626 aaKnown RBP18.76■□□□□ 0.59
TRIM28-206ENST00000595974 TAAR1Q96RJ0 339 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 IWS1Q96ST2 819 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 RMDN3Q96TC7 470 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 AP5M1Q9H0R1 490 aa18.76■□□□□ 0.59
TRIM28-206ENST00000595974 COLQQ9Y215 455 aaPredicted RBP18.76■□□□□ 0.59
TRIM28-206ENST00000595974 CTAGE5O15320 804 aa18.75■□□□□ 0.59
TRIM28-206ENST00000595974 RCAN1P53805 252 aa18.75■□□□□ 0.59
TRIM28-206ENST00000595974 GNASQ5JWF2 1037 aa18.75■□□□□ 0.59
TRIM28-206ENST00000595974 BLOC1S2Q6QNY1 142 aa18.75■□□□□ 0.59
TRIM28-206ENST00000595974 TMTC3Q6ZXV5 915 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms