RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 ADD3Q9UEY8 706 aaKnown RBP20.64■□□□□ 0.89
SHKBP1-203ENST00000594298 MTMR7Q9Y216 660 aa20.64■□□□□ 0.89
SHKBP1-203ENST00000594298 PTGS1P23219 599 aa20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 SLC16A2P36021 539 aa20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 PBX2P40425 430 aa20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 BAATQ14032 418 aaPredicted RBP20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 DUSP28Q4G0W2 176 aa20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 SYDE2Q5VT97 1194 aa20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 FAM227BQ96M60 508 aa20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 PURBQ96QR8 312 aaKnown RBP20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 PNMA2Q9UL42 364 aa20.63■□□□□ 0.89
SHKBP1-203ENST00000594298 GRXCR1A8MXD5 290 aa20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 HSPD1P10809 573 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 PCP11498 1178 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 ALDH5A1P51649 535 aaPredicted RBP20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 TMEM63BQ5T3F8 832 aa20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 ERICH6BQ5W0A0 696 aa20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 KIAA1211Q6ZU35 1233 aa20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 MTIF3Q9H2K0 278 aaKnown RBP20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 TOMM22Q9NS69 142 aa20.62■□□□□ 0.89
SHKBP1-203ENST00000594298 A0A0D9SFI3 127 aa20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 RBM47A0AV96 593 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 NFIBO00712 420 aa20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 B4GALT4O60513 344 aa20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 PDHBP11177 359 aa20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 RRP12Q5JTH9 1297 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 SYMPKQ92797 1274 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 TTC14Q96N46 770 aa20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 NOC4LQ9BVI4 516 aaKnown RBP20.61■□□□□ 0.89
SHKBP1-203ENST00000594298 UMODL1Q5DID0 1318 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 FRMPD2Q68DX3 1309 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 VCANP13611 3396 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 FGBP02675 491 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 PSMC6P62333 389 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 RAB30Q15771 203 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 USP38Q8NB14 1042 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 CLEC4DQ8WXI8 215 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 TRPV6Q9H1D0 765 aa20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 CXXC1Q9P0U4 656 aaPredicted RBP20.6■□□□□ 0.89
SHKBP1-203ENST00000594298 CCDC171Q6TFL3 1326 aa20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 SNHG28P0DPA3 235 aa20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 GSPT1P15170 499 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 CWC27Q6UX04 472 aaKnown RBP20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 ZNF589Q86UQ0 364 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 GAS2L1Q99501 681 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 WDR11Q9BZH6 1224 aa20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 WNT8AQ9H1J5 351 aa20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 ALDH8A1Q9H2A2 487 aaPredicted RBP20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 GPCPD1Q9NPB8 672 aa20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 POLR3EQ9NVU0 708 aa20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 MSRAQ9UJ68 235 aa20.59■□□□□ 0.89
SHKBP1-203ENST00000594298 WDR19Q8NEZ3 1342 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 PTPDC1A2A3K4 754 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 CPT1AP50416 773 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 CCL23P55773 120 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 ZNF543Q08ER8 600 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 AKNAD1Q5T1N1 836 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 SLC30A10Q6XR72 485 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 RUFY2Q8WXA3 655 aa20.58■□□□□ 0.89
SHKBP1-203ENST00000594298 LCTP09848 1927 aa20.58■□□□□ 0.88
SHKBP1-203ENST00000594298 SUPT20HL2P0C7V6 817 aa20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 EDNRBP24530 442 aa20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 NT5C2P49902 561 aa20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 PURAQ00577 322 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 RNF207Q6ZRF8 634 aa20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 MFSD6Q6ZSS7 791 aa20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 RPUSD2Q8IZ73 545 aaKnown RBP20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 DNERQ8NFT8 737 aa20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 PRUNE2Q8WUY3 3088 aa20.57■□□□□ 0.88
SHKBP1-203ENST00000594298 NKRFO15226 690 aaKnown RBP eCLIP20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 CALML3P27482 149 aa20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 HAND2P61296 217 aa20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 RPS6P62753 249 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 TJAP1Q5JTD0 557 aa20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 OTOP2Q7RTS6 562 aa20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 VWCEQ96DN2 955 aa20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 MPHOSPH6Q99547 160 aaKnown RBP20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 RNF41Q9H4P4 317 aaPredicted RBP20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 PRDM12Q9H4Q4 367 aa20.56■□□□□ 0.88
SHKBP1-203ENST00000594298 PFKMP08237 780 aa20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 GPATCH4Q5T3I0 446 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 TBC1D10CQ8IV04 446 aa20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 RGS22Q8NE09 1264 aa20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 OR6J1Q8NGC5 347 aa20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 MTG1Q9BT17 334 aaPredicted RBP20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 MAF1Q9H063 256 aa20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 SPTBN5Q9NRC6 3674 aaKnown RBP20.55■□□□□ 0.88
SHKBP1-203ENST00000594298 TNKSO95271 1327 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 KPNA6O60684 536 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 PDE4DQ08499 809 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 PPP2R5BQ15173 497 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 BRDTQ58F21 947 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 DGKHQ86XP1 1220 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 SCFD2Q8WU76 684 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 ESR2Q92731 530 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 NKX2-4Q9H2Z4 354 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 SLC28A3Q9HAS3 691 aa20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 GPHNQ9NQX3 736 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 TRMT13Q9NUP7 481 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-203ENST00000594298 PPP4R2Q9NY27 417 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms