RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 NMIQ13287 307 aaPredicted RBP15.28■□□□□ 0.04
SF3B3-202ENST00000562722 DUSP28Q4G0W2 176 aa15.28■□□□□ 0.04
SF3B3-202ENST00000562722 BTNL9Q6UXG8 535 aa15.28■□□□□ 0.04
SF3B3-202ENST00000562722 SLC30A10Q6XR72 485 aa15.28■□□□□ 0.04
SF3B3-202ENST00000562722 HERVK_113Q902F9 699 aa15.28■□□□□ 0.04
SF3B3-202ENST00000562722 SYMPKQ92797 1274 aaKnown RBP15.28■□□□□ 0.04
SF3B3-202ENST00000562722 RILPL2Q969X0 211 aa15.28■□□□□ 0.04
SF3B3-202ENST00000562722 MPHOSPH6Q99547 160 aaKnown RBP15.28■□□□□ 0.04
SF3B3-202ENST00000562722 NOC4LQ9BVI4 516 aaKnown RBP15.28■□□□□ 0.04
SF3B3-202ENST00000562722 PRDM12Q9H4Q4 367 aa15.28■□□□□ 0.04
SF3B3-202ENST00000562722 GPHNQ9NQX3 736 aaPredicted RBP15.28■□□□□ 0.04
SF3B3-202ENST00000562722 ZBBXA8MT70 800 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 FGRP09769 529 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 HSPD1P10809 573 aaKnown RBP15.27■□□□□ 0.04
SF3B3-202ENST00000562722 CPT1AP50416 773 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 RNF207Q6ZRF8 634 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 MFSD6Q6ZSS7 791 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 USP38Q8NB14 1042 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 OR6J1Q8NGC5 347 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 MORC4Q8TE76 937 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 NKX2-4Q9H2Z4 354 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 TCP11L1Q9NUJ3 509 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 POLR3EQ9NVU0 708 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 CXXC1Q9P0U4 656 aaPredicted RBP15.27■□□□□ 0.04
SF3B3-202ENST00000562722 PNMA2Q9UL42 364 aa15.27■□□□□ 0.04
SF3B3-202ENST00000562722 CCDC171Q6TFL3 1326 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 RAD50Q92878 1312 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 PDHBP11177 359 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 IGFBP4P22692 258 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 HDAC1Q13547 482 aaPredicted RBP15.26■□□□□ 0.03
SF3B3-202ENST00000562722 BRDTQ58F21 947 aaPredicted RBP15.26■□□□□ 0.03
SF3B3-202ENST00000562722 FAM47CQ5HY64 1035 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 ZNF589Q86UQ0 364 aaPredicted RBP15.26■□□□□ 0.03
SF3B3-202ENST00000562722 RPUSD2Q8IZ73 545 aaKnown RBP15.26■□□□□ 0.03
SF3B3-202ENST00000562722 SCLYQ96I15 445 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 LNPKQ9C0E8 428 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 ALDH8A1Q9H2A2 487 aaPredicted RBP15.26■□□□□ 0.03
SF3B3-202ENST00000562722 SLC28A3Q9HAS3 691 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 TRMT13Q9NUP7 481 aaKnown RBP15.26■□□□□ 0.03
SF3B3-202ENST00000562722 EYSQ5T1H1 3165 aa15.26■□□□□ 0.03
SF3B3-202ENST00000562722 ZMYM6O95789 1325 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 LOC102724159A0A0B4J2E5 919 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 SUPT20HL2P0C7V6 817 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 MFAP1P55081 439 aaKnown RBP15.25■□□□□ 0.03
SF3B3-202ENST00000562722 ZNF543Q08ER8 600 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 PPP2R5BQ15173 497 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 PWP2Q15269 919 aaKnown RBP15.25■□□□□ 0.03
SF3B3-202ENST00000562722 USH1GQ495M9 461 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 TJAP1Q5JTD0 557 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 AKNAD1Q5T1N1 836 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 CLEC4DQ8WXI8 215 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 MTG1Q9BT17 334 aaPredicted RBP15.25■□□□□ 0.03
SF3B3-202ENST00000562722 WNT8AQ9H1J5 351 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 RNF41Q9H4P4 317 aaPredicted RBP15.25■□□□□ 0.03
SF3B3-202ENST00000562722 SLC4A7Q9Y6M7 1214 aa15.25■□□□□ 0.03
SF3B3-202ENST00000562722 TNKSO95271 1327 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 B4DLN1 442 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 PCP11498 1178 aaKnown RBP15.24■□□□□ 0.03
SF3B3-202ENST00000562722 CYP2C9P11712 490 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 MRPL12P52815 198 aaKnown RBP15.24■□□□□ 0.03
SF3B3-202ENST00000562722 CHMP4BP1P59074 171 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 RPS6P62753 249 aaKnown RBP15.24■□□□□ 0.03
SF3B3-202ENST00000562722 PURAQ00577 322 aaKnown RBP15.24■□□□□ 0.03
SF3B3-202ENST00000562722 CCDC85BQ15834 202 aaPredicted RBP15.24■□□□□ 0.03
SF3B3-202ENST00000562722 TBC1D10CQ8IV04 446 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 ESR2Q92731 530 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 TTC14Q96N46 770 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 ZKSCAN3Q9BRR0 538 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 PRDM6Q9NQX0 595 aa15.24■□□□□ 0.03
SF3B3-202ENST00000562722 WDR19Q8NEZ3 1342 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 VCANP13611 3396 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 ZNF213O14771 459 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 GOLGA8HP0CJ92 632 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 RABGGTBP53611 331 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 PPP2R2DQ66LE6 453 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 B4GALNT3Q6L9W6 998 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 DEFB128Q7Z7B8 93 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 TICAM2Q86XR7 235 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 SCFD2Q8WU76 684 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 NOD1Q9Y239 953 aa15.23■□□□□ 0.03
SF3B3-202ENST00000562722 YBX2Q9Y2T7 364 aaKnown RBP15.23■□□□□ 0.03
SF3B3-202ENST00000562722 NEDD4P46934 1319 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 LCTP09848 1927 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 RBM47A0AV96 593 aaKnown RBP15.22■□□□□ 0.03
SF3B3-202ENST00000562722 NKRFO15226 690 aaKnown RBP eCLIP15.22■□□□□ 0.03
SF3B3-202ENST00000562722 TXNP10599 105 aaKnown RBP15.22■□□□□ 0.03
SF3B3-202ENST00000562722 ATP2A2P16615 1042 aaKnown RBP15.22■□□□□ 0.03
SF3B3-202ENST00000562722 NBPF20Q3BBV1 942 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 GPATCH4Q5T3I0 446 aaKnown RBP15.22■□□□□ 0.03
SF3B3-202ENST00000562722 DNERQ8NFT8 737 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 PPP1R13LQ8WUF5 828 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 UBA5Q9GZZ9 404 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 DIAPH3Q9NSV4 1193 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 THEGQ9P2T0 379 aa15.22■□□□□ 0.03
SF3B3-202ENST00000562722 DHX16O60231 1041 aaKnown RBP15.21■□□□□ 0.03
SF3B3-202ENST00000562722 KPNA6O60684 536 aa15.21■□□□□ 0.03
SF3B3-202ENST00000562722 PFKMP08237 780 aa15.21■□□□□ 0.03
SF3B3-202ENST00000562722 SNHG28P0DPA3 235 aa15.21■□□□□ 0.03
SF3B3-202ENST00000562722 ACTN1P12814 892 aa15.21■□□□□ 0.03
SF3B3-202ENST00000562722 SDSP20132 328 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms