RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 CACNB2Q08289 660 aaPredicted RBP3.64□□□□□ -1.83
SPG11-223ENST00000560858 PWP1Q13610 501 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 AUHQ13825 339 aaKnown RBP3.64□□□□□ -1.83
SPG11-223ENST00000560858 CDCP2Q5VXM1 449 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 CRTC3Q6UUV7 619 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 ZNF512BQ96KM6 892 aaPredicted RBP3.64□□□□□ -1.83
SPG11-223ENST00000560858 DEF6Q9H4E7 631 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 PCDH18Q9HCL0 1135 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 C11orf21Q9P2W6 132 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 NUDT5Q9UKK9 219 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 ARHGAP35Q9NRY4 1499 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 CUL7Q14999 1698 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 CLSPNQ9HAW4 1339 aa3.64□□□□□ -1.83
SPG11-223ENST00000560858 PCF11O94913 1555 aaKnown RBP3.63□□□□□ -1.83
SPG11-223ENST00000560858 TACR1P25103 407 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 GBP2P32456 591 aaPredicted RBP3.63□□□□□ -1.83
SPG11-223ENST00000560858 SMAD4Q13485 552 aaKnown RBP3.63□□□□□ -1.83
SPG11-223ENST00000560858 CDSNQ15517 529 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 CWF19L2Q2TBE0 894 aaKnown RBP3.63□□□□□ -1.83
SPG11-223ENST00000560858 RTP2Q5QGT7 225 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 FAM26FQ5R3K3 315 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 SNAP47Q5SQN1 464 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 LINC00482Q8N8I6 264 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 GOLM1Q8NBJ4 401 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 TSPAN17Q96FV3 270 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 PEX11GQ96HA9 241 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 TMEM74Q96NL1 305 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 NOX5Q96PH1 765 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 C1orf115Q9H7X2 142 aa3.63□□□□□ -1.83
SPG11-223ENST00000560858 KIF27Q86VH2 1401 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 EFCAB5A4FU69 1503 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 NPEPPSL1A6NEC2 478 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 F6X3S4 739 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 LAMTOR5O43504 91 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 ZBTB7AO95365 584 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 CENPBP07199 599 aaPredicted RBP3.62□□□□□ -1.83
SPG11-223ENST00000560858 RPL13P26373 211 aaKnown RBP3.62□□□□□ -1.83
SPG11-223ENST00000560858 POLR2BP30876 1174 aaKnown RBP3.62□□□□□ -1.83
SPG11-223ENST00000560858 L1CAMP32004 1257 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 SMN1Q16637 294 aaKnown RBP3.62□□□□□ -1.83
SPG11-223ENST00000560858 LCORQ96JN0 433 aaPredicted RBP3.62□□□□□ -1.83
SPG11-223ENST00000560858 DUSP9Q99956 384 aaKnown RBP3.62□□□□□ -1.83
SPG11-223ENST00000560858 SLC12A9Q9BXP2 914 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 SEMA4AQ9H3S1 761 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 CNNM2Q9H8M5 875 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 PCDHB14Q9Y5E9 798 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 DHX57Q6P158 1386 aaKnown RBP3.62□□□□□ -1.83
SPG11-223ENST00000560858 ROBO2Q9HCK4 1378 aa3.62□□□□□ -1.83
SPG11-223ENST00000560858 MAPKBP1O60336 1514 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 DNMBPQ6XZF7 1577 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 THOC2Q8NI27 1593 aaKnown RBP3.61□□□□□ -1.83
SPG11-223ENST00000560858 FGF10O15520 208 aaPredicted RBP3.61□□□□□ -1.83
SPG11-223ENST00000560858 ATE1O95260 518 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 GLI4P10075 376 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 CYP2C8P10632 490 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 PURAQ00577 322 aaKnown RBP3.61□□□□□ -1.83
SPG11-223ENST00000560858 FAM160A1Q05DH4 1040 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 KLF10Q13118 480 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 NOL9Q5SY16 702 aaKnown RBP3.61□□□□□ -1.83
SPG11-223ENST00000560858 MCTP2Q6DN12 878 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 NLRC3Q7RTR2 1065 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 PLEKHH3Q7Z736 793 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 ATG4CQ96DT6 458 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 DDX11Q96FC9 970 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 DHRS1Q96LJ7 313 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 RSRP1Q9BUV0 290 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 SRRTQ9BXP5 876 aaKnown RBP3.61□□□□□ -1.83
SPG11-223ENST00000560858 BCAS3Q9H6U6 928 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 USP31Q70CQ4 1352 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 LRRIQ1Q96JM4 1722 aa3.61□□□□□ -1.83
SPG11-223ENST00000560858 MINDY4BA8MYZ0 360 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 BRD1O95696 1058 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 TGM1P22735 817 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 FHL2Q14192 279 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 ICAM4Q14773 271 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 OVOS1Q6IE37 1185 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 ZNF585AQ6P3V2 769 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 FAM196AQ6ZSG2 479 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 CIR1Q86X95 450 aaPredicted RBP3.6□□□□□ -1.83
SPG11-223ENST00000560858 TMEM192Q8IY95 271 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 TTLL6Q8N841 843 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 KYQ8NBH2 561 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 FBXO27Q8NI29 283 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 RHOVQ96L33 236 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 SLC6A18Q96N87 628 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 PTCHD1Q96NR3 888 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 C11orf84Q9BUA3 381 aaPredicted RBP3.6□□□□□ -1.83
SPG11-223ENST00000560858 ZNF341Q9BYN7 854 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 PPP4R1LQ9P1A2 415 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 ING1Q9UK53 422 aaPredicted RBP3.6□□□□□ -1.83
SPG11-223ENST00000560858 TCAF1Q9Y4C2 921 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 WDR33Q9C0J8 1336 aaKnown RBP3.6□□□□□ -1.83
SPG11-223ENST00000560858 AQRO60306 1485 aaKnown RBP eCLIP3.6□□□□□ -1.834e-6■■■■■ 31
SPG11-223ENST00000560858 FGD5Q6ZNL6 1462 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 FYCO1Q9BQS8 1478 aa3.6□□□□□ -1.83
SPG11-223ENST00000560858 SAMD9Q5K651 1589 aa3.59□□□□□ -1.83
SPG11-223ENST00000560858 ABCA5Q8WWZ7 1642 aa3.59□□□□□ -1.83
SPG11-223ENST00000560858 TLR3O15455 904 aaKnown RBP3.59□□□□□ -1.83
SPG11-223ENST00000560858 THBS2P35442 1172 aa3.59□□□□□ -1.83
SPG11-223ENST00000560858 INHBEP58166 350 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms