RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ADORA1P30542 326 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 RWDD2BP57060 319 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 VSNL1P62760 191 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 IGBP1P78318 339 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ACTN3Q08043 901 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 G3BP1Q13283 466 aaKnown RBP eCLIP5.87□□□□□ -1.47
USP28-213ENST00000544967 TRIM14Q14142 442 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 FILIP1LQ4L180 1135 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 NT5DC1Q5TFE4 455 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 FERMT3Q86UX7 667 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 NECAB1Q8N987 351 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 SDF4Q9BRK5 362 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 CAPS2Q9BXY5 557 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 TAF1DQ9H5J8 278 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 ANKIB1Q9P2G1 1089 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ADGRG1Q9Y653 693 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 LRRIQ3A6PVS8 624 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 TAF5LO75529 589 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 PRPHP41219 470 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 PHKA1P46020 1223 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 STIM1Q13586 685 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 PDCD2Q16342 344 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 CWC27Q6UX04 472 aaKnown RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 CRELD2Q6UXH1 353 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 PNMA8AQ86V59 439 aaPredicted RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 LDHDQ86WU2 507 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 IQCA1Q86XH1 822 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 IGSF22Q8N9C0 903 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 NSUN7Q8NE18 718 aaKnown RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 CCHCR1Q8TD31 782 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 TATDN2Q93075 761 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 USP28Q96RU2 1077 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 RPS6KC1Q96S38 1066 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 IDI2Q9BXS1 227 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 ZC3H12CQ9C0D7 883 aaKnown RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 HOOK1Q9UJC3 728 aaKnown RBP5.87□□□□□ -1.47
USP28-213ENST00000544967 PCDHA7Q9UN72 937 aa5.87□□□□□ -1.47
USP28-213ENST00000544967 GPR75-ASB3A0A0A6YYF3 556 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 GOLGA6L7A0A1B0GV03 622 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 EIF6P56537 245 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 TBX4P57082 545 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 TRAF1Q13077 416 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 KIAA0753Q2KHM9 967 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 SPDYE2Q495Y8 402 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 CAVIN4Q5BKX8 364 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 CD302Q8IX05 232 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 CLASRPQ8N2M8 674 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 SPATA5Q8NB90 893 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 ZNF784Q8NCA9 323 aaPredicted RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 EHBP1Q8NDI1 1231 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 ARMC2Q8NEN0 867 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 TLR7Q9NYK1 1049 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 ODF2LQ9ULJ1 636 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 BAZ2AQ9UIF9 1905 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 WDR19Q8NEZ3 1342 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 ANO9A1A5B4 782 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 DCAF8L1A6NGE4 600 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 SURF6O75683 361 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 SERPINC1P01008 464 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 EZRP15311 586 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 ERCC5P28715 1186 aaPredicted RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 MLKLQ8NB16 471 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 RNF217Q8TC41 542 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 JDP2Q8WYK2 163 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.86□□□□□ -1.47
USP28-213ENST00000544967 KLC4Q9NSK0 619 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 ETAA1Q9NY74 926 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 HACL1Q9UJ83 578 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 MROH7-TTC4A0A0A0MT08 1334 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 A0A1B0GTH6 734 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 SPDYE2BA6NHP3 402 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 AKR1B15C9JRZ8 316 aaPredicted RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 HOXA2O43364 376 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 N4BP1O75113 896 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 SPDYE6P0CI01 402 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 GHRP10912 638 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 PBX1P40424 430 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 NT5C2P49902 561 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 GMPSP49915 693 aaPredicted RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 BCAMP50895 628 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 SCARF1Q14162 830 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 CCDC38Q502W7 563 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 LACTB2Q53H82 288 aaPredicted RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 FAM173BQ6P4H8 233 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 KDM7AQ6ZMT4 941 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 TRAPPC11Q7Z392 1133 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 FAM83AQ86UY5 434 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 TMTC1Q8IUR5 882 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 CNGA4Q8IV77 575 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 PIK3R5Q8WYR1 880 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 NSUN4Q96CB9 384 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 NEK1Q96PY6 1258 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 CTAGE1Q96RT6 745 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 SENP7Q9BQF6 1050 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 DBNDD2Q9BQY9 259 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 SPATS2LQ9NUQ6 558 aaKnown RBP5.86□□□□□ -1.47
USP28-213ENST00000544967 FAM184BQ9ULE4 1060 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 CHMP3Q9Y3E7 222 aa5.86□□□□□ -1.47
USP28-213ENST00000544967 ABLIM1O14639 778 aa5.85□□□□□ -1.47
USP28-213ENST00000544967 ZNF202O95125 648 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms