RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 FOSBP53539 338 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 TRIM29Q14134 588 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 RNF207Q6ZRF8 634 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 RGS22Q8NE09 1264 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 CD99L2Q8TCZ2 262 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 TBC1D5Q92609 795 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 ERO1AQ96HE7 468 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 C8orf76Q96K31 380 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 TRIM47Q96LD4 638 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 ARHGAP39Q9C0H5 1083 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 C6orf50Q9HD87 102 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 A1CFQ9NQ94 594 aaKnown RBP13.33□□□□□ -0.28
YBX3-213ENST00000542641 GJB4Q9NTQ9 266 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 DAXXQ9UER7 740 aaPredicted RBP13.33□□□□□ -0.28
YBX3-213ENST00000542641 ESYT2A0FGR8 921 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 GCOM1H8Y6P7 765 aaPredicted RBP13.32□□□□□ -0.28
YBX3-213ENST00000542641 OPLAHO14841 1288 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 POLR2MP0CAP2 368 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 CTGFP29279 349 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 GNA11P29992 359 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 ADCY7P51828 1080 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 BAATQ14032 418 aaPredicted RBP13.32□□□□□ -0.28
YBX3-213ENST00000542641 ARHGEF6Q15052 776 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.32□□□□□ -0.28
YBX3-213ENST00000542641 ABRAQ8N0Z2 381 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 FAM177A1Q8N128 213 aaPredicted RBP13.32□□□□□ -0.28
YBX3-213ENST00000542641 CUL5Q93034 780 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 SHISA4Q96DD7 197 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 MAF1Q9H063 256 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 ZMYND12Q9H0C1 365 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 GLT8D2Q9H1C3 349 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 RIC8AQ9NPQ8 531 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 CYP39A1Q9NYL5 469 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 KCNJ14Q9UNX9 436 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 PFASO15067 1338 aa13.32□□□□□ -0.28
YBX3-213ENST00000542641 SLC15A5A6NIM6 579 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 HSPA8P11142 646 aaKnown RBP13.31□□□□□ -0.28
YBX3-213ENST00000542641 CD44P16070 742 aaKnown RBP13.31□□□□□ -0.28
YBX3-213ENST00000542641 CALML3P27482 149 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 ADORA2AP29274 412 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 HOXA13P31271 388 aaPredicted RBP13.31□□□□□ -0.28
YBX3-213ENST00000542641 CTCFP49711 727 aaPredicted RBP13.31□□□□□ -0.28
YBX3-213ENST00000542641 RPS6P62753 249 aaKnown RBP13.31□□□□□ -0.28
YBX3-213ENST00000542641 GUCY1B3Q02153 619 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 GRB14Q14449 540 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 LARP1BQ659C4 914 aaKnown RBP13.31□□□□□ -0.28
YBX3-213ENST00000542641 KRT40Q6A162 431 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 USP17L6PQ6QN14 398 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 SLC30A10Q6XR72 485 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 DPP9Q86TI2 863 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 SAMD3Q8N6K7 520 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 BICD2Q8TD16 824 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 FAM212AQ96EL1 285 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 PHF20Q9BVI0 1012 aa13.31□□□□□ -0.28
YBX3-213ENST00000542641 MAP3K20Q9NYL2 800 aaKnown RBP13.31□□□□□ -0.28
YBX3-213ENST00000542641 H3BQV1 296 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 POTEB2H3BUK9 544 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 PIK3CDO00329 1044 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 MEIS2O14770 477 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 GNRH1P01148 92 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 PGK2P07205 417 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 PDCP20941 246 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 HOXD10P28358 340 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 HSD17B4P51659 736 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 GHRHRQ02643 423 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 MORN1Q5T089 497 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 IFFO2Q5TF58 517 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 GALNT17Q6IS24 598 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 FCHSD1Q86WN1 690 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 TEX2Q8IWB9 1127 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 FBXO18Q8NFZ0 1043 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 SOCS4Q8WXH5 440 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 NUDT12Q9BQG2 462 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 GJD2Q9UKL4 321 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 PCDHA4Q9UN74 947 aa13.3□□□□□ -0.28
YBX3-213ENST00000542641 MYH6P13533 1939 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 DNAJC25-GNG10A0A024R161 153 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 MMP1P03956 469 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 LBX1P52954 281 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 CAP1Q01518 475 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 CNTN2Q02246 1040 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 MAP2K5Q13163 448 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 SAFBQ15424 915 aaKnown RBP eCLIP13.29□□□□□ -0.28
YBX3-213ENST00000542641 UBE2SQ16763 222 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 BLIDQ8IZY5 108 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 REXO1Q8N1G1 1221 aaKnown RBP13.29□□□□□ -0.28
YBX3-213ENST00000542641 SYTL5Q8TDW5 730 aaPredicted RBP13.29□□□□□ -0.28
YBX3-213ENST00000542641 BRMS1Q9HCU9 246 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 SLC5A4Q9NY91 659 aa13.29□□□□□ -0.28
YBX3-213ENST00000542641 BIN2Q9UBW5 565 aaPredicted RBP13.29□□□□□ -0.28
YBX3-213ENST00000542641 SPDYE3A6NKU9 549 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 ADAMTS3O15072 1205 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 COBLO75128 1261 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 CYP2B6P20813 491 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 SYT1P21579 422 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 KRT2P35908 639 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 RGS2P41220 211 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 CLK2P49760 499 aaKnown RBP13.28□□□□□ -0.28
YBX3-213ENST00000542641 FLT3LGP49771 235 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 NPY5RQ15761 445 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms