RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 JAKMIP2Q96AA8 810 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 SHISA4Q96DD7 197 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ARHGEF3Q9NR81 526 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 DMGDHQ9UI17 866 aaKnown RBP9.3□□□□□ -0.92
CSMD1-213ENST00000523488 SIGLEC16A6NMB1 481 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 ENO4A6NNW6 628 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 NEURL1BA8MQ27 555 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 MYL1P05976 194 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 EEF1GP26641 437 aaKnown RBP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 MATR3P43243 847 aaKnown RBP eCLIP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 COPB1P53618 953 aaKnown RBP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 PLS1Q14651 629 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 MSL1Q68DK7 614 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 CNNM4Q6P4Q7 775 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 RNF10Q8N5U6 811 aaKnown RBP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 TBC1D31Q96DN5 1066 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 ADAM7Q9H2U9 754 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 NOD2Q9HC29 1040 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 JADE2Q9NQC1 790 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 GMNCA6NCL1 334 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 E7EVH7 732 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 FERP16591 822 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 NR1D1P20393 614 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 KRT83P78385 493 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 FKBP15Q5T1M5 1219 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 CCDC181Q5TID7 509 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 INPP4AQ96PE3 977 aaPredicted RBP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 CCDC28BQ9BUN5 200 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 EDEM3Q9BZQ6 932 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 PRKAG3Q9UGI9 489 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 TCP1P17987 556 aaKnown RBP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 PSMC4P43686 418 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 NOSTRINQ8IVI9 506 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 DDX21Q9NR30 783 aaKnown RBP eCLIP9.29□□□□□ -0.92
CSMD1-213ENST00000523488 ZNF831Q5JPB2 1677 aa9.29□□□□□ -0.92
CSMD1-213ENST00000523488 TRIM37O94972 964 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 IFNAR1P17181 557 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 ARID4AP29374 1257 aaPredicted RBP9.28□□□□□ -0.92
CSMD1-213ENST00000523488 POU5F1Q01860 360 aaKnown RBP9.28□□□□□ -0.92
CSMD1-213ENST00000523488 AKAP4Q5JQC9 854 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 KRT40Q6A162 431 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 MB21D1Q8N884 522 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 NUP133Q8WUM0 1156 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 ZBTB10Q96DT7 871 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 PAGE5Q96GU1 130 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 SEC16BQ96JE7 1060 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 TTC7AQ9ULT0 858 aaPredicted RBP9.28□□□□□ -0.92
CSMD1-213ENST00000523488 CDK5RAP2Q96SN8 1893 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 XDHP47989 1333 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 A0A0G2JLW4 131 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 GOLGA6L10A6NI86 522 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 ALDH1B1P30837 517 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 NLRP6P59044 892 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 QPCTQ16769 361 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 CFAP58Q5T655 872 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 CHST3Q7LGC8 479 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 TRIM58Q8NG06 486 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 MTRQ99707 1265 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 ISCUQ9H1K1 167 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 EPB41L4BQ9H329 900 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 CCDC9Q9Y3X0 531 aaKnown RBP9.28□□□□□ -0.92
CSMD1-213ENST00000523488 AP1G2O75843 785 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 CD151P48509 253 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 STX17P56962 302 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 FOXO4P98177 505 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 MAP3K12Q12852 859 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 NPY5RQ15761 445 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 RILPL1Q5EBL4 403 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 SCFD2Q8WU76 684 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 HDAC7Q8WUI4 952 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 SYN2Q92777 582 aaPredicted RBP9.28□□□□□ -0.92
CSMD1-213ENST00000523488 LRRC1Q9BTT6 524 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 TAF1DQ9H5J8 278 aaPredicted RBP9.28□□□□□ -0.92
CSMD1-213ENST00000523488 POLD4Q9HCU8 107 aa9.28□□□□□ -0.92
CSMD1-213ENST00000523488 PPANQ9NQ55 473 aaKnown RBP9.28□□□□□ -0.92
CSMD1-213ENST00000523488 M0R2C6 588 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 RNF113AO15541 343 aaKnown RBP9.27□□□□□ -0.93
CSMD1-213ENST00000523488 SRGAP2O75044 1071 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 NUDT17P0C025 328 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 GCKRQ14397 625 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 ZNF827Q17R98 1081 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 CCDC122Q5T0U0 273 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 NCAPG2Q86XI2 1143 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 PYM1Q9BRP8 204 aaKnown RBP9.27□□□□□ -0.93
CSMD1-213ENST00000523488 HDAC6Q9UBN7 1215 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 GMEB1Q9Y692 573 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 SPATA31A3Q5VYP0 1347 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 N4BP3O15049 544 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 CDKL5O76039 1030 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 ZFYP08048 801 aaPredicted RBP9.27□□□□□ -0.93
CSMD1-213ENST00000523488 CCND1P24385 295 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 PPARDQ03181 441 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 FUT2Q10981 343 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 PSMD2Q13200 908 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 SEPT2Q15019 361 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 ACCSLQ4AC99 568 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 DAB2IPQ5VWQ8 1189 aa9.27□□□□□ -0.93
CSMD1-213ENST00000523488 CAPRIN2Q6IMN6 1127 aaKnown RBP9.27□□□□□ -0.93
CSMD1-213ENST00000523488 CCDC129Q6ZRS4 1044 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms