RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PSTPIP2Q9H939 334 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 CYP39A1Q9NYL5 469 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 GABRQQ9UN88 632 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 KIF3AQ9Y496 699 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 ZNF236Q9UL36 1845 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 SMCO2A6NFE2 343 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 GCOM1H8Y6P7 765 aaPredicted RBP17.2■□□□□ 0.34
NUP54-213ENST00000513352 OPLAHO14841 1288 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 GNRH1P01148 92 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 POLR2MP0CAP2 368 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 FDPSP14324 419 aaKnown RBP17.2■□□□□ 0.34
NUP54-213ENST00000513352 CYP2B6P20813 491 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 GJB2P29033 226 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 HOXA13P31271 388 aaPredicted RBP17.2■□□□□ 0.34
NUP54-213ENST00000513352 RGS2P41220 211 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 RPS6P62753 249 aaKnown RBP17.2■□□□□ 0.34
NUP54-213ENST00000513352 MAP2K5Q13163 448 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 MORN1Q5T089 497 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 TYW1BQ6NUM6 668 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 OTOP1Q7RTM1 612 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 FCHSD1Q86WN1 690 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 SPRYD3Q8NCJ5 442 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 RAET1EQ8TD07 263 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 TBC1D5Q92609 795 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 C6orf50Q9HD87 102 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 SH3GLB2Q9NR46 395 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 SLC5A4Q9NY91 659 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 SRRDQ9UH36 339 aa17.2■□□□□ 0.34
NUP54-213ENST00000513352 FLT3LGP49771 235 aa17.19■□□□□ 0.34
NUP54-213ENST00000513352 UBE2SQ16763 222 aa17.19■□□□□ 0.34
NUP54-213ENST00000513352 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.19■□□□□ 0.34
NUP54-213ENST00000513352 APBA2Q99767 749 aa17.19■□□□□ 0.34
NUP54-213ENST00000513352 KCNJ14Q9UNX9 436 aa17.19■□□□□ 0.34
NUP54-213ENST00000513352 COBLO75128 1261 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 MRPL12P52815 198 aaKnown RBP17.18■□□□□ 0.34
NUP54-213ENST00000513352 GUCY1B3Q02153 619 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 CNTN2Q02246 1040 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 USP17L6PQ6QN14 398 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 CTU1Q7Z7A3 348 aaKnown RBP17.18■□□□□ 0.34
NUP54-213ENST00000513352 RGS22Q8NE09 1264 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 C8orf76Q96K31 380 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 RIC8AQ9NPQ8 531 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 GJB4Q9NTQ9 266 aa17.18■□□□□ 0.34
NUP54-213ENST00000513352 LCTP09848 1927 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 ESYT2A0FGR8 921 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 GNA11P29992 359 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 HSD17B4P51659 736 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 NPLOC4Q8TAT6 608 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 BICD2Q8TD16 824 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 SYTL5Q8TDW5 730 aaPredicted RBP17.17■□□□□ 0.34
NUP54-213ENST00000513352 INTS4Q96HW7 963 aaKnown RBP17.17■□□□□ 0.34
NUP54-213ENST00000513352 PURBQ96QR8 312 aaKnown RBP17.17■□□□□ 0.34
NUP54-213ENST00000513352 GLT8D2Q9H1C3 349 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 BRMS1Q9HCU9 246 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 TSHZ2Q9NRE2 1034 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 GJD2Q9UKL4 321 aa17.17■□□□□ 0.34
NUP54-213ENST00000513352 DNAJC25-GNG10A0A024R161 153 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 PRMT2P55345 433 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 ZNF792Q3KQV3 632 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 SAMD3Q8N6K7 520 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 SHISA4Q96DD7 197 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 ZMYND12Q9H0C1 365 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 PRDM10Q9NQV6 1147 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 BIN2Q9UBW5 565 aaPredicted RBP17.16■□□□□ 0.34
NUP54-213ENST00000513352 DAXXQ9UER7 740 aaPredicted RBP17.16■□□□□ 0.34
NUP54-213ENST00000513352 PTCH2Q9Y6C5 1203 aa17.16■□□□□ 0.34
NUP54-213ENST00000513352 MCM3APO60318 1980 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 SPDYE3A6NKU9 549 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 H3BQV1 296 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 MEIS2O14770 477 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 EIF2AK2P19525 551 aaKnown RBP17.15■□□□□ 0.34
NUP54-213ENST00000513352 CCL14Q16627 93 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 IFFO2Q5TF58 517 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 ARHGEF16Q5VV41 709 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 JAKMIP3Q5VZ66 844 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 KRT40Q6A162 431 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 REXO1Q8N1G1 1221 aaKnown RBP17.15■□□□□ 0.34
NUP54-213ENST00000513352 FAM133AQ8N9E0 248 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 RASGRP4Q8TDF6 673 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 USP6NLQ92738 828 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 PGBD1Q96JS3 809 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 TAAR1Q96RJ0 339 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 RMDN3Q96TC7 470 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 PHF20Q9BVI0 1012 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 EHMT1Q9H9B1 1298 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 TMEM260Q9NX78 707 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 MAP3K20Q9NYL2 800 aaKnown RBP17.15■□□□□ 0.34
NUP54-213ENST00000513352 COL20A1Q9P218 1284 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 ADD3Q9UEY8 706 aaKnown RBP17.15■□□□□ 0.34
NUP54-213ENST00000513352 PCDHA4Q9UN74 947 aa17.15■□□□□ 0.34
NUP54-213ENST00000513352 SOWAHBA6NEL2 793 aa17.14■□□□□ 0.33
NUP54-213ENST00000513352 PIK3CDO00329 1044 aa17.14■□□□□ 0.33
NUP54-213ENST00000513352 ADCY3O60266 1144 aa17.14■□□□□ 0.33
NUP54-213ENST00000513352 ELNP15502 786 aa17.14■□□□□ 0.33
NUP54-213ENST00000513352 ALDH5A1P51649 535 aaPredicted RBP17.14■□□□□ 0.33
NUP54-213ENST00000513352 UBXN2AP68543 259 aa17.14■□□□□ 0.33
NUP54-213ENST00000513352 GNL2Q13823 731 aaKnown RBP17.14■□□□□ 0.33
NUP54-213ENST00000513352 SAFBQ15424 915 aaKnown RBP eCLIP17.14■□□□□ 0.33
NUP54-213ENST00000513352 LARP1BQ659C4 914 aaKnown RBP17.14■□□□□ 0.33
NUP54-213ENST00000513352 BLIDQ8IZY5 108 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms