RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 IGKV5-2P06315 115 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 HMGB1P09429 215 aaKnown RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 HOXD11P31277 338 aaPredicted RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 EIF4A3P38919 411 aaKnown RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 SLC8A3P57103 927 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 EIF4A1P60842 406 aaKnown RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 XRCC4Q13426 336 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 SPA17Q15506 151 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 UAP1Q16222 522 aaPredicted RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 CDC37Q16543 378 aaPredicted RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 LRRC24Q50LG9 513 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 KLHL29Q96CT2 875 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 ERLEC1Q96DZ1 483 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 TMEM237Q96Q45 408 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 PUS3Q9BZE2 481 aaKnown RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 ARPP21Q9UBL0 812 aaPredicted RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 INTUQ9ULD6 942 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 ADGRB1O14514 1584 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 GOLGA8AA7E2F4 631 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 WASLO00401 505 aaPredicted RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 ZNF213O14771 459 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 IFIT3O14879 490 aaKnown RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 DAPK3O43293 454 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 IFIT1P09914 478 aaKnown RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 ZNF844Q08AG5 666 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 TUBB2AQ13885 445 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 SCARF1Q14162 830 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 CDKAL1Q5VV42 579 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 GALNT17Q6IS24 598 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 ANO7Q6IWH7 933 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 SEPT14Q6ZU15 432 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 NOSTRINQ8IVI9 506 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 IFT20Q8IY31 132 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 TUBB2BQ9BVA1 445 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 EBF2Q9HAK2 575 aa8□□□□□ -1.13
LIMCH1-207ENST00000508466 ANGEL1Q9UNK9 670 aaKnown RBP8□□□□□ -1.13
LIMCH1-207ENST00000508466 ADAMTS3O15072 1205 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 PPP6R2O75170 966 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ZCCHC18P0CG32 403 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 CHN1P15882 459 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ADORA1P30542 326 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 DEUP1Q05D60 604 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 SLC4A8Q2Y0W8 1093 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 LMBR1LQ6UX01 489 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 SPATA21Q7Z572 469 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 YTHDF3Q7Z739 585 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 IRF2BP1Q8IU81 584 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 MB21D1Q8N884 522 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 KBTBD3Q8NAB2 608 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 DRAXINQ8NBI3 349 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 GDAP1Q8TB36 358 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 LRRC59Q96AG4 307 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ACTR5Q9H9F9 607 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 PREBQ9HCU5 417 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 DBR1Q9UK59 544 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 UBN2Q6ZU65 1347 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 PREX2Q70Z35 1606 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 RASSF10A6NK89 507 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 TACC1O75410 805 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ITGA4P13612 1032 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 CREB1P16220 341 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 DRD4P21917 467 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 CCNFP41002 786 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ERVK-9P63128 1117 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ADAM9Q13443 819 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 TNIP1Q15025 636 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 IMMTQ16891 758 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 SLC5A9Q2M3M2 681 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 TDRD12Q587J7 1177 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 EMBQ6PCB8 327 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 RRAGAQ7L523 313 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ANKRD42Q8N9B4 389 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 CCDC197Q8NCU1 140 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 DYDC1Q8WWB3 177 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 NAF1Q96HR8 494 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 L3MBTL3Q96JM7 780 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 TRIM47Q96LD4 638 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 TLR10Q9BXR5 811 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 TMBIM4Q9HC24 238 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 PCDHA13Q9Y5I0 950 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 CCDC61Q9Y6R9 512 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 MRC2Q9UBG0 1479 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 PTPRUQ92729 1446 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 FOXP2O15409 715 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 OATP04181 439 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 MMEP08473 750 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 SPATA31D3P0C874 917 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 KIF5BP33176 963 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 SLC1A4P43007 532 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 MAGEA1P43355 309 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 RAD23BP54727 409 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 LRRC23Q53EV4 343 aaPredicted RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ZMYM1Q5SVZ6 1142 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 SPATA31D4Q6ZUB0 917 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 ARHGAP22Q7Z5H3 698 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 SUPT20HQ8NEM7 779 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 PAIP2Q9BPZ3 127 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 NDST4Q9H3R1 872 aa7.99□□□□□ -1.13
LIMCH1-207ENST00000508466 RMI1Q9H9A7 625 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms