RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 SNW1Q13573 536 aaKnown RBP9.57□□□□□ -0.88
SF3A1-210ENST00000498259 VGLL4Q14135 290 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 CALCRLQ16602 461 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 PRAMEF18Q5VWM3 479 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 CCDC174Q6PII3 467 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 RASGRP2Q7LDG7 609 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 LDHDQ86WU2 507 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 GTF3C2Q8WUA4 911 aaPredicted RBP9.57□□□□□ -0.88
SF3A1-210ENST00000498259 LRRC27Q9C0I9 530 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 CSRNP2Q9H175 543 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 MAGEF1Q9HAY2 307 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 EMILIN3Q9NT22 766 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 ANO10Q9NW15 660 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 DACH1Q9UI36 760 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 HPSEQ9Y251 543 aa9.57□□□□□ -0.88
SF3A1-210ENST00000498259 CYP3A7-CYP3A51PA0A087WV96 503 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 FSD2A1L4K1 749 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 SPDYE5A6NIY4 337 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 B4DLN1 442 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 ATP2A1O14983 1001 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 PPP1R11O60927 126 aaPredicted RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 OSBPP22059 807 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 CYP3A7P24462 503 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 HOXA7P31268 230 aaPredicted RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 SREBF1P36956 1147 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 HMGCS2P54868 508 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 TPM4P67936 248 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 AMPD3Q01432 767 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 PPIL2Q13356 520 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 PRKG1Q13976 671 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 CAMK4Q16566 473 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 UVSSAQ2YD98 709 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 XRRA1Q6P2D8 792 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 SHC4Q6S5L8 630 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 SAMD1Q6SPF0 538 aaPredicted RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 CATSPERGQ6ZRH7 1159 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 RBM43Q6ZSC3 357 aaKnown RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 KCTD17Q8N5Z5 321 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 C2orf69Q8N8R5 385 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 ERMNQ8TAM6 284 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 RASGRP4Q8TDF6 673 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 CCDC47Q96A33 483 aaKnown RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 SHISA4Q96DD7 197 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 SLC10A4Q96EP9 437 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 CALML4Q96GE6 196 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 FAM20AQ96MK3 541 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 MPHOSPH6Q99547 160 aaKnown RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 ANO3Q9BYT9 981 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 GRPEL1Q9HAV7 217 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 FBXO40Q9UH90 709 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 DDX25Q9UHL0 483 aaKnown RBP9.56□□□□□ -0.88
SF3A1-210ENST00000498259 PNMA3Q9UL41 463 aa9.56□□□□□ -0.88
SF3A1-210ENST00000498259 VWA5AO00534 786 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 MEIS2O14770 477 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 POLR2DO15514 142 aaKnown RBP9.55□□□□□ -0.88
SF3A1-210ENST00000498259 CFBP00751 764 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 CYP3A4P08684 503 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 SLFN14P0C7P3 912 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 DSG3P32926 999 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 FXR2P51116 673 aaKnown RBP eCLIP9.55□□□□□ -0.88
SF3A1-210ENST00000498259 IRX3P78415 501 aaPredicted RBP9.55□□□□□ -0.88
SF3A1-210ENST00000498259 ARHGAP4P98171 946 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 SETQ01105 290 aaPredicted RBP9.55□□□□□ -0.88
SF3A1-210ENST00000498259 SNAPC2Q13487 334 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 STX1AQ16623 288 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 EARS2Q5JPH6 523 aaKnown RBP9.55□□□□□ -0.88
SF3A1-210ENST00000498259 KRT79Q5XKE5 535 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 KRBA2Q6ZNG9 492 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 CDK5RAP3Q96JB5 506 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 CLIC6Q96NY7 704 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 TEX13BQ9BXU2 312 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 GLIS2Q9BZE0 524 aaPredicted RBP9.55□□□□□ -0.88
SF3A1-210ENST00000498259 CCSER1Q9C0I3 900 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 KIAA1468Q9P260 1216 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 PCDHA12Q9UN75 941 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 SNCAIPQ9Y6H5 919 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 DOCK1Q14185 1865 aa9.55□□□□□ -0.88
SF3A1-210ENST00000498259 WDR90Q96KV7 1748 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 A0A0G2JLL6 359 aaPredicted RBP9.54□□□□□ -0.88
SF3A1-210ENST00000498259 FAM205CA6NFA0 338 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 ALAS1P13196 640 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 CIITAP33076 1130 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 GHRHRQ02643 423 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 TYRO3Q06418 890 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 UBE2SQ16763 222 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 Q4G0T1 1027 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 CT47A1Q5JQC4 288 aaPredicted RBP9.54□□□□□ -0.88
SF3A1-210ENST00000498259 KIAA1755Q5JYT7 1200 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 RRAGBQ5VZM2 374 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 HAUS3Q68CZ6 603 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 USP17L6PQ6QN14 398 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 PRRT2Q7Z6L0 340 aaPredicted RBP9.54□□□□□ -0.88
SF3A1-210ENST00000498259 CPXCR1Q8N123 301 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 C4orf32Q8N8J7 132 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 TRIML1Q8N9V2 468 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 SYMPKQ92797 1274 aaKnown RBP9.54□□□□□ -0.88
SF3A1-210ENST00000498259 NT5C3AQ9H0P0 336 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 GOLPH3LQ9H4A5 285 aa9.54□□□□□ -0.88
SF3A1-210ENST00000498259 ELP3Q9H9T3 547 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms