RNA–Protein interactions for RNA: ENST00000409531.5

TSPAN4-208, Transcript of tetraspanin 4, humanhuman

TSL 5 BASIC

Gene TSPAN4, Length 1,339 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-208ENST00000409531 TRIB2Q92519 343 aa19.02■□□□□ 0.64
TSPAN4-208ENST00000409531 IPO9Q96P70 1041 aaKnown RBP19.02■□□□□ 0.64
TSPAN4-208ENST00000409531 TEX13BQ9BXU2 312 aa19.02■□□□□ 0.64
TSPAN4-208ENST00000409531 RNF208Q9H0X6 261 aa19.02■□□□□ 0.64
TSPAN4-208ENST00000409531 SH3GLB2Q9NR46 395 aa19.02■□□□□ 0.64
TSPAN4-208ENST00000409531 FOXD4L1Q9NU39 408 aa19.02■□□□□ 0.64
TSPAN4-208ENST00000409531 FCER1AP12319 257 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 SNAP25P60880 206 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 TRIM29Q14134 588 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 DPP9Q86TI2 863 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 CCDC148Q8NFR7 591 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 APBA2Q99767 749 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 ALG1Q9BT22 464 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 RAVER2Q9HCJ3 691 aaKnown RBP19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 BARHL2Q9NY43 387 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 CCPG1Q9ULG6 757 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 PCDHA1Q9Y5I3 950 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 ABCB11O95342 1321 aa19.01■□□□□ 0.63
TSPAN4-208ENST00000409531 GJB1P08034 283 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 PDIA4P13667 645 aaKnown RBP19■□□□□ 0.63
TSPAN4-208ENST00000409531 EN2P19622 333 aaPredicted RBP19■□□□□ 0.63
TSPAN4-208ENST00000409531 ADORA2AP29274 412 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 TKFCQ3LXA3 575 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 SNRNP48Q6IEG0 339 aaKnown RBP19■□□□□ 0.63
TSPAN4-208ENST00000409531 PPP1R18Q6NYC8 613 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 SPRYD3Q8NCJ5 442 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 RGS22Q8NE09 1264 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 UNC93B1Q9H1C4 597 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 SLC5A4Q9NY91 659 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 RIPK3Q9Y572 518 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 ZNF536O15090 1300 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 PLXNB2O15031 1838 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 SLC4A3P48751 1232 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 NAPAP54920 295 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 CCL14Q16627 93 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 USH1GQ495M9 461 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 WWC2Q6AWC2 1192 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 C8orf76Q96K31 380 aa19■□□□□ 0.63
TSPAN4-208ENST00000409531 MRPL11Q9Y3B7 192 aaKnown RBP19■□□□□ 0.63
TSPAN4-208ENST00000409531 RBBP6Q7Z6E9 1792 aaKnown RBP18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 STXBP3O00186 592 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 PPP1R11O60927 126 aaPredicted RBP18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 DTNBO60941 627 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 COBLO75128 1261 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 TRIM32Q13049 653 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 KCTD2Q14681 263 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 LARP1BQ659C4 914 aaKnown RBP18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 NPLOC4Q8TAT6 608 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 GPKOWQ92917 476 aaPredicted RBP eCLIP18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 AGBL1Q96MI9 1066 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 MMP19Q99542 508 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 GLT8D2Q9H1C3 349 aa18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 HMX1Q9NP08 348 aaPredicted RBP18.99■□□□□ 0.63
TSPAN4-208ENST00000409531 RPTORQ8N122 1335 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 ALAS1P13196 640 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 CALML3P27482 149 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 GJA8P48165 433 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 MAP3K21Q5TCX8 1036 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 TEX2Q8IWB9 1127 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 AIFM3Q96NN9 605 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 VPS54Q9P1Q0 977 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 FBXO40Q9UH90 709 aa18.98■□□□□ 0.63
TSPAN4-208ENST00000409531 ESYT2A0FGR8 921 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 SGPL1O95470 568 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 CAPN2P17655 700 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 GNA11P29992 359 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 CACNB2Q08289 660 aaPredicted RBP18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 MFSD14CQ5VZR4 134 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 GALNT17Q6IS24 598 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 MCF2L2Q86YR7 1114 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 SAMD3Q8N6K7 520 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 CHST13Q8NET6 341 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 TRERF1Q96PN7 1200 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 MAF1Q9H063 256 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 PAK6Q9NQU5 681 aaPredicted RBP18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 FLRT1Q9NZU1 646 aa18.97■□□□□ 0.63
TSPAN4-208ENST00000409531 H3BQV1 296 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 IGHA2P01877 340 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 PRKAR2AP13861 404 aaKnown RBP18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 NLRP5P59047 1200 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 OLFML2BQ68BL8 750 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 FBXO18Q8NFZ0 1043 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 BICD2Q8TD16 824 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 U2AF1L4Q8WU68 220 aaKnown RBP18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 DEFB118Q96PH6 123 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 ZMYND12Q9H0C1 365 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.96■□□□□ 0.632e-6■■■■□ 19.5
TSPAN4-208ENST00000409531 ACAD9Q9H845 621 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 BRMS1Q9HCU9 246 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 C6orf50Q9HD87 102 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 RNF146Q9NTX7 359 aa18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 DIS3Q9Y2L1 958 aaKnown RBP18.96■□□□□ 0.63
TSPAN4-208ENST00000409531 SMCO2A6NFE2 343 aa18.95■□□□□ 0.62
TSPAN4-208ENST00000409531 PGK2P07205 417 aa18.95■□□□□ 0.62
TSPAN4-208ENST00000409531 ADCY7P51828 1080 aa18.95■□□□□ 0.62
TSPAN4-208ENST00000409531 MRPL12P52815 198 aaKnown RBP18.95■□□□□ 0.62
TSPAN4-208ENST00000409531 SAFBQ15424 915 aaKnown RBP eCLIP18.95■□□□□ 0.62
TSPAN4-208ENST00000409531 KRT40Q6A162 431 aa18.95■□□□□ 0.62
TSPAN4-208ENST00000409531 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.95■□□□□ 0.625e-6■■■■■ 45.5
TSPAN4-208ENST00000409531 CUL5Q93034 780 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms