RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 APBA2Q99767 749 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 MSRB2Q9Y3D2 182 aa5.33□□□□□ -1.56
HMGB1-204ENST00000399489 HRKO00198 91 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 PLIN1O60240 522 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 DNAJA2O60884 412 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 USP2O75604 605 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-204ENST00000399489 UBOX5O94941 541 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 PNLIPP16233 465 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 MCM4P33991 863 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 ARL4AP40617 200 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 TMEM62Q0P6H9 643 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 DHX8Q14562 1220 aaKnown RBP5.32□□□□□ -1.56
HMGB1-204ENST00000399489 TKFCQ3LXA3 575 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 BRDTQ58F21 947 aaPredicted RBP5.32□□□□□ -1.56
HMGB1-204ENST00000399489 OVOS1Q6IE37 1185 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 GALNT18Q6P9A2 607 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 NLRX1Q86UT6 975 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 WDR75Q8IWA0 830 aaKnown RBP5.32□□□□□ -1.56
HMGB1-204ENST00000399489 DNAJC7Q99615 494 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 SENP7Q9BQF6 1050 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 SPON2Q9BUD6 331 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 KCNQ5Q9NR82 932 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 TNFRSF10DQ9UBN6 386 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 FBXL21Q9UKT6 434 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 STRIP2Q9ULQ0 834 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 KCTD3Q9Y597 815 aa5.32□□□□□ -1.56
HMGB1-204ENST00000399489 MYOCOSA0A1B0GUC4 107 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 SIGLEC6O43699 453 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 GREM1O60565 184 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 FKTNO75072 461 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 LDHAP00338 332 aaKnown RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 CTSWP56202 376 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 SRSF3P84103 164 aaKnown RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 APOBRQ0VD83 1088 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 SQSTM1Q13501 440 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 SAFB2Q14151 953 aaKnown RBP eCLIP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 NFE2Q16621 373 aaPredicted RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 SEZ6Q53EL9 994 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 NLRC3Q7RTR2 1065 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 JAMLQ86YT9 394 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 KIAA0825Q8IV33 1275 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 REXO1Q8N1G1 1221 aaKnown RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 MPHOSPH6Q99547 160 aaKnown RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 MKRN2Q9H000 416 aaKnown RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 ZCCHC4Q9H5U6 513 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 CNNM2Q9H8M5 875 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 EHMT1Q9H9B1 1298 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 CHST7Q9NS84 486 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 EFR3BQ9Y2G0 817 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 ZNF281Q9Y2X9 895 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 TAF6LQ9Y6J9 622 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 WTIPA6NIX2 430 aaPredicted RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 TSPAN6O43657 245 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 SOX9P48436 509 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 LAPTM5Q13571 262 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 KRBA2Q6ZNG9 492 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 GK5Q6ZS86 529 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 KRT26Q7Z3Y9 468 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 TMC3Q7Z5M5 1100 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 NKD1Q969G9 470 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 ATG4CQ96DT6 458 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 ZNF512BQ96KM6 892 aaPredicted RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 FCRL2Q96LA5 508 aaPredicted RBP5.31□□□□□ -1.56
HMGB1-204ENST00000399489 G6PC3Q9BUM1 346 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 PRKAG3Q9UGI9 489 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 ATP8A1Q9Y2Q0 1164 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 PCDHB12Q9Y5F1 795 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 IRAK3Q9Y616 596 aa5.31□□□□□ -1.56
HMGB1-204ENST00000399489 IFRD1O00458 451 aaPredicted RBP5.3□□□□□ -1.56
HMGB1-204ENST00000399489 CAND2O75155 1236 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 PRAMEF1O95521 474 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 MPOP05164 745 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 POU3F3P20264 500 aaPredicted RBP5.3□□□□□ -1.56
HMGB1-204ENST00000399489 RTP1P59025 263 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 OS9Q13438 667 aaPredicted RBP5.3□□□□□ -1.56
HMGB1-204ENST00000399489 HDAC1Q13547 482 aaPredicted RBP5.3□□□□□ -1.56
HMGB1-204ENST00000399489 SAMD3Q8N6K7 520 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 SHISA4Q96DD7 197 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 SIGLEC10Q96LC7 697 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 DHRS1Q96LJ7 313 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 FAM126AQ9BYI3 521 aaPredicted RBP5.3□□□□□ -1.56
HMGB1-204ENST00000399489 PRDM14Q9GZV8 571 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 CCDC113Q9H0I3 377 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 ARNT2Q9HBZ2 717 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 GINM1Q9NU53 330 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 EBF1Q9UH73 591 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 ADAMTS1Q9UHI8 967 aa5.3□□□□□ -1.56
HMGB1-204ENST00000399489 KCNQ2O43526 872 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 BDNFP23560 247 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 GALK1P51570 392 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 EPHB1P54762 984 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 VPS72Q15906 364 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 FAM9BQ8IZU0 186 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 HHIPL1Q96JK4 782 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 MTA3Q9BTC8 594 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 SGPP1Q9BX95 441 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 PARD6AQ9NPB6 346 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 SFMBT1Q9UHJ3 866 aa5.29□□□□□ -1.56
HMGB1-204ENST00000399489 A0A1W2PQ27 194 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 A0A1W2PQ64 194 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms