RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FCER1AP12319 257 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 IFNAR1P17181 557 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 LIG1P18858 919 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 GUCY1B3Q02153 619 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 IRF5Q13568 498 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 CDC37Q16543 378 aaPredicted RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 ATL3Q6DD88 541 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 GPR142Q7Z601 462 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 FBXO11Q86XK2 927 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 MCF2L2Q86YR7 1114 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 SRBD1Q8N5C6 995 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 PDLIM2Q96JY6 352 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 ZNF396Q96N95 335 aaPredicted RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 MYL10Q9BUA6 226 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 ACAD9Q9H845 621 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 RAVER2Q9HCJ3 691 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 RRAGDQ9NQL2 400 aaPredicted RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 FAM217BQ9NTX9 383 aaPredicted RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 ORC3Q9UBD5 711 aaPredicted RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 TSKSQ9UJT2 592 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 CCPG1Q9ULG6 757 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 DIS3Q9Y2L1 958 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 MRPL11Q9Y3B7 192 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 ABCB11O95342 1321 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 LOC102724159A0A0B4J2E5 919 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 CYTH3O43739 400 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 HOXC6P09630 235 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 PTPREP23469 700 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 FUT2Q10981 343 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 GRB14Q14449 540 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 PWP2Q15269 919 aaKnown RBP11.67□□□□□ -0.54
VPS53-202ENST00000389040 RASGRP2Q7LDG7 609 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 NCAPG2Q86XI2 1143 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 CPXCR1Q8N123 301 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 CD99L2Q8TCZ2 262 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 PGBD1Q96JS3 809 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 C8orf76Q96K31 380 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 TRIM47Q96LD4 638 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 NUDT12Q9BQG2 462 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 FUCA2Q9BTY2 467 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 RNF26Q9BY78 433 aaPredicted RBP11.67□□□□□ -0.54
VPS53-202ENST00000389040 GLT8D2Q9H1C3 349 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 NUP62CLQ9H1M0 184 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 PORCNQ9H237 461 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 SRRDQ9UH36 339 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 PFASO15067 1338 aa11.67□□□□□ -0.54
VPS53-202ENST00000389040 PRPF3O43395 683 aaKnown RBP11.66□□□□□ -0.54
VPS53-202ENST00000389040 AKAP17AQ02040 695 aaKnown RBP11.66□□□□□ -0.54
VPS53-202ENST00000389040 KCTD2Q14681 263 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 QRICH1Q2TAL8 776 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 MORN1Q5T089 497 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 OTOP1Q7RTM1 612 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 TRIM22Q8IYM9 498 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 FBXO18Q8NFZ0 1043 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 PXYLP1Q8TE99 480 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 AGBL1Q96MI9 1066 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 TRERF1Q96PN7 1200 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 VAT1LQ9HCJ6 419 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 GJD2Q9UKL4 321 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 PCDHA1Q9Y5I3 950 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 RXRAP19793 462 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 RGS2P41220 211 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 VASPP50552 380 aaPredicted RBP11.66□□□□□ -0.54
VPS53-202ENST00000389040 GHRHRQ02643 423 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 NTRK3Q16288 839 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 UVSSAQ2YD98 709 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 CCDC174Q6PII3 467 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 NBPF11Q86T75 865 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 CCDC144CPQ8IYA2 1237 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 MSL3Q8N5Y2 521 aaKnown RBP11.66□□□□□ -0.54
VPS53-202ENST00000389040 BICD2Q8TD16 824 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 USP6NLQ92738 828 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 DDX19AQ9NUU7 478 aaKnown RBP11.66□□□□□ -0.54
VPS53-202ENST00000389040 DACT1Q9NYF0 836 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 RCOR1Q9UKL0 485 aa11.66□□□□□ -0.54
VPS53-202ENST00000389040 RLFQ13129 1914 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 A0A0G2JMZ2 1700 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 PLEKHA8P1O95397 391 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 ALAS1P13196 640 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 CDC27P30260 824 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 CEBPZQ03701 1054 aaKnown RBP11.65□□□□□ -0.54
VPS53-202ENST00000389040 PPP1R18Q6NYC8 613 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 CCDC12Q8WUD4 166 aaPredicted RBP11.65□□□□□ -0.54
VPS53-202ENST00000389040 USP28Q96RU2 1077 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 PIGSQ96S52 555 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 MMP19Q99542 508 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 RNF146Q9NTX7 359 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 RIPK3Q9Y572 518 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 TRIM17Q9Y577 477 aa11.65□□□□□ -0.54
VPS53-202ENST00000389040 ESPNB1AK53 854 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 MAP2K5Q13163 448 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 FBXO46Q6PJ61 603 aaPredicted RBP11.64□□□□□ -0.55
VPS53-202ENST00000389040 ZNF467Q7Z7K2 595 aaPredicted RBP11.64□□□□□ -0.55
VPS53-202ENST00000389040 ANKRD35Q8N283 1001 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 FTOQ9C0B1 505 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS53-202ENST00000389040 CPVLQ9H3G5 476 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 SH3GLB2Q9NR46 395 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 PTPN22Q9Y2R2 807 aa11.64□□□□□ -0.55
VPS53-202ENST00000389040 V9GY48 417 aaPredicted RBP11.64□□□□□ -0.55
VPS53-202ENST00000389040 CNTNAP5Q8WYK1 1306 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms