RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 EDIL3O43854 480 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 ITGBL1O95965 494 aaPredicted RBP30.49■■■□□ 2.47
MSX1-201ENST00000382723 FAM160A1Q05DH4 1040 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 MCTP2Q6DN12 878 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 CSRNP2Q9H175 543 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 TMEM60Q9H2L4 133 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 PFKFB1P16118 471 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 RESP18Q5W5W9 173 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 REPS2Q8NFH8 660 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 FERMT2Q96AC1 680 aa30.49■■■□□ 2.47
MSX1-201ENST00000382723 VWA3AA6NCI4 1184 aa30.48■■■□□ 2.47
MSX1-201ENST00000382723 NFIBO00712 420 aa30.48■■■□□ 2.47
MSX1-201ENST00000382723 TDP2O95551 362 aa30.48■■■□□ 2.47
MSX1-201ENST00000382723 FOSP01100 380 aaPredicted RBP30.48■■■□□ 2.47
MSX1-201ENST00000382723 SNW1Q13573 536 aaKnown RBP30.48■■■□□ 2.47
MSX1-201ENST00000382723 ENGASEQ8NFI3 743 aa30.48■■■□□ 2.47
MSX1-201ENST00000382723 CLEC4DQ8WXI8 215 aa30.48■■■□□ 2.47
MSX1-201ENST00000382723 SMCHD1A6NHR9 2005 aa30.48■■■□□ 2.47
MSX1-201ENST00000382723 PTPRFP10586 1907 aa30.48■■■□□ 2.47
MSX1-201ENST00000382723 NEMFO60524 1076 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 CAMK4Q16566 473 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 MUM1L1Q5H9M0 696 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 CST9Q5W186 159 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 DDX19AQ9NUU7 478 aaKnown RBP30.47■■■□□ 2.47
MSX1-201ENST00000382723 MYPNQ86TC9 1320 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 SYCE3A1L190 88 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 MKRN3Q13064 507 aaKnown RBP30.47■■■□□ 2.47
MSX1-201ENST00000382723 SNAPC2Q13487 334 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 TMEM132BQ14DG7 1078 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 SNRNP48Q6IEG0 339 aaKnown RBP30.47■■■□□ 2.47
MSX1-201ENST00000382723 PNMA2Q9UL42 364 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 AGTPBP1Q9UPW5 1226 aa30.47■■■□□ 2.47
MSX1-201ENST00000382723 PARP14Q460N5 1801 aa30.46■■■□□ 2.47
MSX1-201ENST00000382723 HOXA7P31268 230 aaPredicted RBP30.46■■■□□ 2.47
MSX1-201ENST00000382723 IL17AQ16552 155 aa30.46■■■□□ 2.47
MSX1-201ENST00000382723 ZNF579Q8NAF0 562 aaKnown RBP30.46■■■□□ 2.47
MSX1-201ENST00000382723 TRERF1Q96PN7 1200 aa30.46■■■□□ 2.47
MSX1-201ENST00000382723 NUP62CLQ9H1M0 184 aa30.46■■■□□ 2.47
MSX1-201ENST00000382723 IRX3P78415 501 aaPredicted RBP30.45■■■□□ 2.47
MSX1-201ENST00000382723 MOGSQ13724 837 aa30.45■■■□□ 2.47
MSX1-201ENST00000382723 PLS1Q14651 629 aa30.45■■■□□ 2.47
MSX1-201ENST00000382723 GSE1Q14687 1217 aa30.45■■■□□ 2.47
MSX1-201ENST00000382723 ARL6IP4Q66PJ3 421 aaKnown RBP30.45■■■□□ 2.47
MSX1-201ENST00000382723 FASTKD5Q7L8L6 764 aaKnown RBP30.45■■■□□ 2.47
MSX1-201ENST00000382723 POTEDQ86YR6 584 aa30.45■■■□□ 2.47
MSX1-201ENST00000382723 FMR1NBQ8N0W7 255 aaPredicted RBP30.45■■■□□ 2.47
MSX1-201ENST00000382723 ZNF214Q9UL59 606 aaPredicted RBP30.45■■■□□ 2.47
MSX1-201ENST00000382723 RIPK3Q9Y572 518 aa30.45■■■□□ 2.47
MSX1-201ENST00000382723 RLFQ13129 1914 aa30.45■■■□□ 2.47
MSX1-201ENST00000382723 OAZ1P54368 228 aa30.45■■■□□ 2.46
MSX1-201ENST00000382723 SLC37A4O43826 429 aa30.44■■■□□ 2.46
MSX1-201ENST00000382723 KINO60870 393 aaKnown RBP30.44■■■□□ 2.46
MSX1-201ENST00000382723 ARHGAP4P98171 946 aa30.44■■■□□ 2.46
MSX1-201ENST00000382723 MCF2L2Q86YR7 1114 aa30.44■■■□□ 2.46
MSX1-201ENST00000382723 TEX2Q8IWB9 1127 aa30.44■■■□□ 2.46
MSX1-201ENST00000382723 CLSTN2Q9H4D0 955 aa30.44■■■□□ 2.46
MSX1-201ENST00000382723 GPBP1L1Q9HC44 474 aaPredicted RBP30.44■■■□□ 2.46
MSX1-201ENST00000382723 LOC285556D6RIA3 1793 aa30.44■■■□□ 2.46
MSX1-201ENST00000382723 LAD1O00515 517 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 ORC2Q13416 577 aaPredicted RBP30.43■■■□□ 2.46
MSX1-201ENST00000382723 PPP4R3AQ6IN85 833 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 ASCC2Q9H1I8 757 aaPredicted RBP30.43■■■□□ 2.46
MSX1-201ENST00000382723 RNF146Q9NTX7 359 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 FAM13BQ9NYF5 915 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 DDX25Q9UHL0 483 aaKnown RBP30.43■■■□□ 2.46
MSX1-201ENST00000382723 OR52Z1P0C646 297 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 SREBF1P36956 1147 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 USP11P51784 963 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 DTHD1Q6ZMT9 781 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 USP49Q70CQ1 688 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 HPSEQ9Y251 543 aa30.43■■■□□ 2.46
MSX1-201ENST00000382723 SYKP43405 635 aa30.42■■■□□ 2.46
MSX1-201ENST00000382723 HSD17B4P51659 736 aa30.42■■■□□ 2.46
MSX1-201ENST00000382723 TEX13BQ9BXU2 312 aa30.42■■■□□ 2.46
MSX1-201ENST00000382723 TNMDQ9H2S6 317 aa30.42■■■□□ 2.46
MSX1-201ENST00000382723 PEX10O60683 326 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 ZNF202O95125 648 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 CALCRLQ16602 461 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 GPAT2Q6NUI2 795 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 CRYGNQ8WXF5 182 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 EPSTI1Q96J88 318 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 KCNH3Q9ULD8 1083 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 ATP2A1O14983 1001 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 GCFC2P16383 781 aaKnown RBP30.41■■■□□ 2.46
MSX1-201ENST00000382723 STAT3P40763 770 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 POTEEQ6S8J3 1075 aa30.41■■■□□ 2.46
MSX1-201ENST00000382723 NAP1L4Q99733 375 aaKnown RBP30.41■■■□□ 2.46
MSX1-201ENST00000382723 FAM237AA0A1B0GTK4 181 aa30.4■■■□□ 2.46
MSX1-201ENST00000382723 PRPHP41219 470 aa30.4■■■□□ 2.46
MSX1-201ENST00000382723 UBXN2AP68543 259 aa30.4■■■□□ 2.46
MSX1-201ENST00000382723 NSMFQ6X4W1 530 aa30.4■■■□□ 2.46
MSX1-201ENST00000382723 LBX2Q6XYB7 198 aa30.4■■■□□ 2.46
MSX1-201ENST00000382723 SYMPKQ92797 1274 aaKnown RBP30.4■■■□□ 2.46
MSX1-201ENST00000382723 PANK2Q9BZ23 570 aa30.4■■■□□ 2.46
MSX1-201ENST00000382723 HUNKP57058 714 aa30.39■■■□□ 2.46
MSX1-201ENST00000382723 ZNF445P59923 1031 aa30.39■■■□□ 2.46
MSX1-201ENST00000382723 PABPC4Q13310 644 aaKnown RBP eCLIP30.39■■■□□ 2.469e-6■■■■□ 24.7
MSX1-201ENST00000382723 COL20A1Q9P218 1284 aa30.39■■■□□ 2.46
MSX1-201ENST00000382723 LETM1O95202 739 aaPredicted RBP30.39■■■□□ 2.46
MSX1-201ENST00000382723 HERVK_113P62684 666 aa30.39■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms