RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 NAA25Q14CX7 972 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 USP17L2Q6R6M4 530 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 SRBD1Q8N5C6 995 aaKnown RBP5.09□□□□□ -1.6
VPS13C-201ENST00000249837 CTTNBP2NLQ9P2B4 639 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 SRP68Q9UHB9 627 aaKnown RBP5.09□□□□□ -1.6
VPS13C-201ENST00000249837 MYH7P12883 1935 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 ADAMTS13Q76LX8 1427 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 TCP1P17987 556 aaKnown RBP5.09□□□□□ -1.6
VPS13C-201ENST00000249837 GRIPAP1Q4V328 841 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 KRT26Q7Z3Y9 468 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 TPH2Q8IWU9 490 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 WDR17Q8IZU2 1322 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 PXDNLA1KZ92 1463 aa5.09□□□□□ -1.6
VPS13C-201ENST00000249837 RPL13P26373 211 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PDCLQ13371 301 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 SLC44A5Q8NCS7 719 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 DISC1Q9NRI5 854 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 NEURL4Q96JN8 1562 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 AFDNP55196 1824 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 GOLGA8KD6RF30 607 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 SNAP25P60880 206 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 USH1GQ495M9 461 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC174Q6PII3 467 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 REXO1L1PQ8IX06 675 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TC2NQ8N9U0 490 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 AP1M1Q9BXS5 423 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 SUGCTQ9HAC7 445 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 USTQ9Y2C2 406 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 SIGLEC1Q9BZZ2 1709 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ABCC12Q96J65 1359 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 USP17L5A8MUK1 530 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 HARSP12081 509 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 KLK7P49862 253 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 MFSD14BQ5SR56 506 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 RBM43Q6ZSC3 357 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 SH3RF3Q8TEJ3 882 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ASIC3Q9UHC3 531 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 GGA1Q9UJY5 639 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 JRKLQ9Y4A0 524 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ZNF185O15231 689 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 GCNT3O95395 438 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 GTF2IP78347 998 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 IRX5P78411 483 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC77Q9BR77 488 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ATP8A2Q9NTI2 1148 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 IFNAR2P48551 515 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PLCB3Q01970 1234 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TRIM28Q13263 835 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ADAM9Q13443 819 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PRR16Q569H4 304 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PROCA1Q8NCQ7 364 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 NHEJ1Q9H9Q4 299 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 AMFRQ9UKV5 643 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ACTN4O43707 911 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ATP1A1P05023 1023 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 USP14P54578 494 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 NEK8Q86SG6 692 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 SMARCAL1Q9NZC9 954 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 WDR19Q8NEZ3 1342 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TCP10Q12799 353 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TMC4Q7Z404 712 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC50Q8IVM0 306 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 FAM212AQ96EL1 285 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 CABS1Q96KC9 395 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PCDHA12Q9UN75 941 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 MRFAP1Q9Y605 127 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ZNF804BA4D1E1 1349 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 A0A087WUV0 522 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ARHGEF35A5YM69 484 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 SEMA3EO15041 775 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 FLOT1O75955 427 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TRIM58Q8NG06 486 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TMEM260Q9NX78 707 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 LIMA1Q9UHB6 759 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PRPHP41219 470 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 RBM17Q96I25 401 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PSTPIP2Q9H939 334 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ARMCX3Q9UH62 379 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 NPHP4O75161 1426 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 MYCLP12524 364 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PABPC4Q13310 644 aaKnown RBP eCLIP5.08□□□□□ -1.63e-8■■□□□ 11.4
VPS13C-201ENST00000249837 PTPAQ15257 358 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 E2F4Q16254 413 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TBCKQ8TEA7 893 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 TSKSQ9UJT2 592 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 CEMIPQ8WUJ3 1361 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 RGPD8O14715 1765 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 KRT5P13647 590 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 GGCXP38435 758 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 LACTBP83111 547 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC6Q16204 474 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 GSTA5Q7RTV2 222 aa5.08□□□□□ -1.6
VPS13C-201ENST00000249837 ADD3Q9UEY8 706 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 UTP11Q9Y3A2 253 aaKnown RBP5.08□□□□□ -1.6
VPS13C-201ENST00000249837 PPFIA4O75335 1185 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 GFPT2O94808 682 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 GNA14O95837 355 aa5.07□□□□□ -1.6
VPS13C-201ENST00000249837 IL6STP40189 918 aaPredicted RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms