RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Ubn2Q80WC1 1314 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Idh1O88844 414 aaKnown RBP12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Hoxc9P09633 260 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Tubgcp3P58854 905 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ddx31Q6NZQ2 687 aaKnown RBP12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm43738A0A0G2JEA5 862 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ppp1r13bQ62415 1087 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Nfkbil1O88995 381 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Tmod1P49813 359 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Naa35Q6PHQ8 725 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ppp1r12bQ8BG95 976 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Etf1Q8BWY3 437 aaKnown RBP12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ttc27Q8CD92 847 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Mphosph8Q3TYA6 858 aaKnown RBP12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Dhx37Q6NZL1 1150 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Q80Y73 168 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Fra10ac1Q8BP78 315 aa12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 NonoQ99K48 473 aaKnown RBP12.95□□□□□ -0.34
Trim56-201ENSMUST00000054384 Cyth3O08967 399 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 H2afzP0C0S6 128 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Atp8a1P70704 1164 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Spata18Q0P557 537 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 H2afvQ3THW5 128 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 P3h4Q8K2B0 443 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Slc25a24Q8BMD8 475 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Trmt10cQ3UFY8 414 aaKnown RBP12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Bbs9Q811G0 885 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Rnf207Q3V3A7 635 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Cttnbp2nlQ99LJ0 638 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Atg3Q9CPX6 314 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ccdc182Q9D9C6 152 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ecel1Q9JMI0 775 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 PapolbQ9WVP6 641 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Iqca1lA6H690 825 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Kcnb2A6H8H5 907 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 G3bp2P97379 482 aaKnown RBP12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Foxd4Q60688 444 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Actn1Q7TPR4 892 aaKnown RBP12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Slc39a6Q8C145 765 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gimap7Q8R379 293 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Prdm11A2AGX3 565 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Kmt5aQ2YDW7 349 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 E330017A01RikQ8BU47 192 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Arhgap29Q8CGF1 1266 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Foxp1P58462 705 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Pcif1P59114 706 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Rassf6Q80UQ2 353 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Lyve1Q8BHC0 318 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Pard3bQ9CSB4 1203 aa12.94□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gpatch8A2A6A1 1505 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Zc3h18Q0P678 948 aaKnown RBP12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Q6PD19 689 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Stx19Q8R1Q0 292 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Hdac11Q91WA3 347 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Rad17Q6NXW6 688 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Spag7Q7TNE3 227 aaKnown RBP12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 GlyctkQ8QZY2 523 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 1700109H08RikQ9D9C0 210 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Copb1Q9JIF7 953 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Sdccag3A2AIW0 432 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 RpsaP14206 295 aaKnown RBP12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ccdc15Q8C9M2 810 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Fmn2Q9JL04 1578 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Lrriq4A6H6A4 596 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Eya1P97767 591 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Znf652Q5DU09 608 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 CtcfQ61164 736 aaKnown RBP12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Klhl29Q80T74 875 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Adprhl2Q8CG72 370 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Hdac4Q6NZM9 1076 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Cdc23Q8BGZ4 597 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 6820408C15RikQ8BJX2 354 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Trim66Q924W6 1242 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gimd1E9PW74 217 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm4841E9QAA8 417 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Bcap29Q61334 240 aa12.93□□□□□ -0.34
Trim56-201ENSMUST00000054384 Serpina3iD3Z450 408 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Ftl2P49945 183 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Sec23ipQ6NZC7 998 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Sugt1Q9CX34 336 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Gm11549A0A286YD83 63 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Rap1gds1E9Q912 607 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Krt74Q6IFZ9 495 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Emilin1Q99K41 1017 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Atg4a-psA0A0G2JFS9 396 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Yipf3Q3UDR8 347 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Zbtb8osQ505B7 168 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 AsphQ8BSY0 741 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Atg4aQ8C9S8 396 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Wdr7Q920I9 1489 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Kif6E9PX57 802 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Q80ZQ3 298 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Hyou1Q9JKR6 999 aaKnown RBP12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Pex3Q9QXY9 372 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Snx14Q8BHY8 964 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Edc3Q8K2D3 508 aaKnown RBP12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Nek8Q91ZR4 698 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 AacsQ9D2R0 672 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 HpdP49429 393 aa12.92□□□□□ -0.34
Trim56-201ENSMUST00000054384 Cadps2Q8BYR5 1297 aa12.92□□□□□ -0.34
Retrieved 100 of 22,080 RNA–protein pairs in 47.7 ms