RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 GAB4Q2WGN9 574 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 DALRD3Q5D0E6 543 aaKnown RBP6.74□□□□□ -1.33
LINC00560-201ENST00000564593 TMPRSS7Q7RTY8 843 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 LINC00116Q8NCU8 138 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 FOXP3Q9BZS1 431 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 ATP13A1Q9HD20 1204 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 BACE2Q9Y5Z0 518 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 PITPNM2Q9BZ72 1349 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 BLACEA4D250 179 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 TGFB1P01137 390 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 GSTM1P09488 218 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 SEPHS1P49903 392 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 PABPC4Q13310 644 aaKnown RBP eCLIP6.73□□□□□ -1.33
LINC00560-201ENST00000564593 FILIP1Q7Z7B0 1213 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 CREG2Q8IUH2 290 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 ASB11Q8WXH4 323 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 HRASLS5Q96KN8 279 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 PUS7Q96PZ0 661 aaKnown RBP6.73□□□□□ -1.33
LINC00560-201ENST00000564593 MRPL4Q9BYD3 311 aaKnown RBP6.73□□□□□ -1.33
LINC00560-201ENST00000564593 GPRC5CQ9NQ84 441 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 PLAAQ9Y263 795 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 PRKAB1Q9Y478 270 aa6.73□□□□□ -1.33
LINC00560-201ENST00000564593 FKTNO75072 461 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 ZNF205O95201 554 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 THBDP07204 575 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 SPINK2P20155 84 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 CYP4F3Q08477 520 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 AOC3Q16853 763 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 FNDC3BQ53EP0 1204 aaKnown RBP6.72□□□□□ -1.33
LINC00560-201ENST00000564593 SLC35F1Q5T1Q4 408 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 RNF111Q6ZNA4 994 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 COPS5Q92905 334 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 NINJ1Q92982 152 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 SPC25Q9HBM1 224 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 PCDHA11Q9Y5I1 949 aa6.72□□□□□ -1.33
LINC00560-201ENST00000564593 DNAJC6O75061 913 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 RFPL3O75679 317 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 GABREP78334 506 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 PRKCQQ04759 706 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 RTP2Q5QGT7 225 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 USP53Q70EK8 1073 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 KSR1Q8IVT5 923 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 DHX37Q8IY37 1157 aaKnown RBP6.71□□□□□ -1.34
LINC00560-201ENST00000564593 NIM1KQ8IY84 436 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 KREMEN2Q8NCW0 462 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 C1orf159Q96HA4 380 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 CLUHP3Q96NS8 147 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 CDADC1Q9BWV3 514 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 TMX1Q9H3N1 280 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 AP5S1Q9NUS5 200 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 IFT57Q9NWB7 429 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 NDOR1Q9UHB4 597 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 SFMBT1Q9UHJ3 866 aa6.71□□□□□ -1.34
LINC00560-201ENST00000564593 ADAMTS4O75173 837 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 ESR1P03372 595 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 C6orf222P0C671 652 aaPredicted RBP6.7□□□□□ -1.34
LINC00560-201ENST00000564593 GRIK1P39086 918 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 MASP1P48740 699 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 EGR3Q06889 387 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 NTRK3Q16288 839 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 EEF1DP3Q658K8 133 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 RCSD1Q6JBY9 416 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 KRTAP5-3Q6L8H2 238 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 INTS5Q6P9B9 1019 aaKnown RBP6.7□□□□□ -1.34
LINC00560-201ENST00000564593 PPIL6Q8IXY8 311 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 FRS2Q8WU20 508 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 PTPRN2Q92932 1015 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 VAV3Q9UKW4 847 aa6.7□□□□□ -1.34
LINC00560-201ENST00000564593 PLS3P13797 630 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 RPL10P27635 214 aaKnown RBP6.69□□□□□ -1.34
LINC00560-201ENST00000564593 DENND5AQ6IQ26 1287 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 NPLOC4Q8TAT6 608 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 SLC7A14Q8TBB6 771 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 DCAF4Q8WV16 495 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 MFSD3Q96ES6 412 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 CLEC1BQ9P126 229 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 IRS4O14654 1257 aaPredicted RBP6.69□□□□□ -1.34
LINC00560-201ENST00000564593 MEFVO15553 781 aaPredicted RBP6.69□□□□□ -1.34
LINC00560-201ENST00000564593 EFCAB14O75071 495 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 ENDOUP21128 410 aaKnown RBP6.69□□□□□ -1.34
LINC00560-201ENST00000564593 JAG1P78504 1218 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 PTPROQ16827 1216 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 MSMPQ1L6U9 139 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 TM4SF20Q53R12 229 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 TRIM61Q5EBN2 209 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 MAMDC2Q7Z304 686 aaPredicted RBP6.69□□□□□ -1.34
LINC00560-201ENST00000564593 MISP3Q96FF7 219 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 SLC52A2Q9HAB3 445 aa6.69□□□□□ -1.34
LINC00560-201ENST00000564593 NPHP3-ACAD11A0A0J9YXS1 232 aa6.68□□□□□ -1.34
LINC00560-201ENST00000564593 TMEM82A0PJX8 343 aa6.68□□□□□ -1.34
LINC00560-201ENST00000564593 PPM1GO15355 546 aaPredicted RBP6.68□□□□□ -1.34
LINC00560-201ENST00000564593 FGF10O15520 208 aaPredicted RBP6.68□□□□□ -1.34
LINC00560-201ENST00000564593 KCNQ2O43526 872 aa6.68□□□□□ -1.34
LINC00560-201ENST00000564593 TEKQ02763 1124 aa6.68□□□□□ -1.34
LINC00560-201ENST00000564593 BNIP3Q12983 259 aa6.68□□□□□ -1.34
LINC00560-201ENST00000564593 IKZF1Q13422 519 aa6.68□□□□□ -1.34
LINC00560-201ENST00000564593 ACBD5Q5T8D3 534 aaPredicted RBP6.68□□□□□ -1.34
LINC00560-201ENST00000564593 E4F1Q66K89 784 aaPredicted RBP6.68□□□□□ -1.34
LINC00560-201ENST00000564593 ZPBP2Q6X784 338 aa6.68□□□□□ -1.34
LINC00560-201ENST00000564593 WAPLQ7Z5K2 1190 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms