RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 PES1O00541 588 aaKnown RBP12.52□□□□□ -0.41
CUX1-212ENST00000547394 ZBTB7AO95365 584 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 DPEP1P16444 411 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 ECE1P42892 770 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 ICA1Q05084 483 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 STYK1Q6J9G0 422 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 KRT25Q7Z3Z0 450 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 GPIHBP1Q8IV16 184 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 DAGLBQ8NCG7 672 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 MYRIPQ8NFW9 859 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 CNKSR1Q969H4 720 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 DESI2Q9BSY9 194 aa12.52□□□□□ -0.41
CUX1-212ENST00000547394 PSMD14O00487 310 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 NKRFO15226 690 aaKnown RBP eCLIP12.51□□□□□ -0.416e-7■■■□□ 16.5
CUX1-212ENST00000547394 GSDMDP57764 484 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 MTF1Q14872 753 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 ASPRV1Q53RT3 343 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 ARL6IP4Q66PJ3 421 aaKnown RBP12.51□□□□□ -0.41
CUX1-212ENST00000547394 SLFN13Q68D06 897 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 LARGE2Q8N3Y3 721 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 NELFBQ8WX92 580 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 GSDMAQ96QA5 445 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 TAB2Q9NYJ8 693 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 PI4KBQ9UBF8 816 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 GTPBP6O43824 516 aaPredicted RBP12.51□□□□□ -0.41
CUX1-212ENST00000547394 SNHG28P0DPA3 235 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 FCER1AP12319 257 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 NOVP48745 357 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 QRICH1Q2TAL8 776 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 KMT5BQ4FZB7 885 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 DYMQ7RTS9 669 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 CCDC12Q8WUD4 166 aaPredicted RBP12.51□□□□□ -0.41
CUX1-212ENST00000547394 MMTAG2Q9BU76 263 aaKnown RBP12.51□□□□□ -0.41
CUX1-212ENST00000547394 SWAP70Q9UH65 585 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 DACH1Q9UI36 760 aa12.51□□□□□ -0.41
CUX1-212ENST00000547394 A0A0U1RQJ8 604 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 A0A1W2PRG0 241 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 PTPN14Q15678 1187 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 ATRIPQ8WXE1 791 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 PPP1R13BQ96KQ4 1090 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 ATF5Q9Y2D1 282 aaPredicted RBP12.5□□□□□ -0.41
CUX1-212ENST00000547394 CBFA2T2O43439 604 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 RAD51AP2Q09MP3 1159 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 CALCRLQ16602 461 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 RBM26Q5T8P6 1007 aaKnown RBP12.5□□□□□ -0.41
CUX1-212ENST00000547394 SPATA1Q5VX52 437 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 APTXQ7Z2E3 356 aaKnown RBP12.5□□□□□ -0.41
CUX1-212ENST00000547394 TRIML1Q8N9V2 468 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 CCDC34Q96HJ3 373 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 P2RX7Q99572 595 aaKnown RBP12.5□□□□□ -0.41
CUX1-212ENST00000547394 IMPACTQ9P2X3 320 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 PCDHA1Q9Y5I3 950 aa12.5□□□□□ -0.41
CUX1-212ENST00000547394 PNMA6FA0A0J9YX94 578 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 F5H6K3 240 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 HOXA13P31271 388 aaPredicted RBP12.49□□□□□ -0.41
CUX1-212ENST00000547394 KLRC3Q07444 240 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 ABCB5Q2M3G0 1257 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 KIAA1755Q5JYT7 1200 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 KCNK18Q7Z418 384 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 ELOA2Q8IYF1 753 aaPredicted RBP12.49□□□□□ -0.41
CUX1-212ENST00000547394 CCDC150Q8NCX0 1101 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 ACER1Q8TDN7 264 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 TMEM39BQ9GZU3 492 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 PSTPIP2Q9H939 334 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 POLD4Q9HCU8 107 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 ZBTB5O15062 677 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 ASIC1P78348 528 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 MCM6Q14566 821 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 CDC37Q16543 378 aaPredicted RBP12.49□□□□□ -0.41
CUX1-212ENST00000547394 SYT10Q6XYQ8 523 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 TOGARAM2Q6ZUX3 1019 aa12.49□□□□□ -0.41
CUX1-212ENST00000547394 RNF225M0QZC1 329 aaPredicted RBP12.48□□□□□ -0.41
CUX1-212ENST00000547394 MARCH6O60337 910 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 NDUFB10O96000 172 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 SSBP05455 408 aaKnown RBP eCLIP12.48□□□□□ -0.41
CUX1-212ENST00000547394 ERCC5P28715 1186 aaPredicted RBP12.48□□□□□ -0.41
CUX1-212ENST00000547394 STAT3P40763 770 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 CACNB1Q02641 598 aaPredicted RBP12.48□□□□□ -0.41
CUX1-212ENST00000547394 PAK1Q13153 545 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 KRT31Q15323 416 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 ECM1Q16610 540 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 SPECC1LQ69YQ0 1117 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 GALNT17Q6IS24 598 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 GLIS3Q8NEA6 775 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 PLIN4Q96Q06 1357 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 KLRC4O43908 158 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 RBL2Q08999 1139 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 STK4Q13043 487 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 DGKZQ13574 1117 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 NR1I3Q14994 352 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 ZNF710Q8N1W2 664 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 TTLL6Q8N841 843 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 TC2NQ8N9U0 490 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 SLC39A2Q9NP94 309 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 LRWD1Q9UFC0 647 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 SMCHD1A6NHR9 2005 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 MYH8P13535 1937 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 LRRN4CLQ8ND94 238 aa12.48□□□□□ -0.41
CUX1-212ENST00000547394 GLIS2Q9BZE0 524 aaPredicted RBP12.48□□□□□ -0.41
CUX1-212ENST00000547394 SERPINA10Q9UK55 444 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms