RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 CUL4AQ13619 759 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 PFKFB3Q16875 520 aaPredicted RBP13.39□□□□□ -0.27
YBX3-213ENST00000542641 HEATR3Q7Z4Q2 680 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 NCAPG2Q86XI2 1143 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 SMARCC2Q8TAQ2 1214 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 COA7Q96BR5 231 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 TRERF1Q96PN7 1200 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 HOMER2Q9NSB8 354 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 ORC3Q9UBD5 711 aaPredicted RBP13.39□□□□□ -0.27
YBX3-213ENST00000542641 RIPK3Q9Y572 518 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 STK36Q9NRP7 1315 aa13.39□□□□□ -0.27
YBX3-213ENST00000542641 SLC25A27O95847 323 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 HSP90AA1P07900 732 aaKnown RBP13.38□□□□□ -0.27
YBX3-213ENST00000542641 SCG2P13521 617 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 TAL1P17542 331 aaPredicted RBP13.38□□□□□ -0.27
YBX3-213ENST00000542641 ERCC3P19447 782 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 COPB2P35606 906 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 ANP32AP39687 249 aaKnown RBP13.38□□□□□ -0.27
YBX3-213ENST00000542641 NUBP1P53384 320 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 HMGN5P82970 282 aaKnown RBP13.38□□□□□ -0.27
YBX3-213ENST00000542641 SP3Q02447 781 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 PKN1Q16512 942 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 TKFCQ3LXA3 575 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 WDR78Q5VTH9 848 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 WASF1Q92558 559 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 GPKOWQ92917 476 aaPredicted RBP eCLIP13.38□□□□□ -0.27
YBX3-213ENST00000542641 MROH8Q9H579 483 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 CWC22Q9HCG8 908 aaKnown RBP13.38□□□□□ -0.27
YBX3-213ENST00000542641 TSKSQ9UJT2 592 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 MRPL11Q9Y3B7 192 aaKnown RBP13.38□□□□□ -0.27
YBX3-213ENST00000542641 ABCB11O95342 1321 aa13.38□□□□□ -0.27
YBX3-213ENST00000542641 PARP14Q460N5 1801 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 hCG_1984214I3L0E3 225 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 GPR25O00155 361 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 ECM2O94769 699 aaPredicted RBP13.37□□□□□ -0.27
YBX3-213ENST00000542641 FDPSP14324 419 aaKnown RBP13.37□□□□□ -0.27
YBX3-213ENST00000542641 MAPK4P31152 587 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 NAPAP54920 295 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 WWC2Q6AWC2 1192 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 ZNF713Q8N859 430 aaPredicted RBP13.37□□□□□ -0.27
YBX3-213ENST00000542641 FAM184AQ8NB25 1140 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 SHCBP1Q8NEM2 672 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 CHST13Q8NET6 341 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 INTS4Q96HW7 963 aaKnown RBP13.37□□□□□ -0.27
YBX3-213ENST00000542641 PORCNQ9H237 461 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 EFCC1Q9HA90 598 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 RNF146Q9NTX7 359 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 BARHL2Q9NY43 387 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 FBXO40Q9UH90 709 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 SMC3Q9UQE7 1217 aa13.37□□□□□ -0.27
YBX3-213ENST00000542641 RBM19Q9Y4C8 960 aaKnown RBP13.37□□□□□ -0.27
YBX3-213ENST00000542641 STXBP3O00186 592 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 KIF22Q14807 665 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 MUM1L1Q5H9M0 696 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 CCDC12Q8WUD4 166 aaPredicted RBP13.36□□□□□ -0.27
YBX3-213ENST00000542641 AIFM3Q96NN9 605 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 ALG1Q9BT22 464 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 ACAD9Q9H845 621 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 KIF3AQ9Y496 699 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 BAZ2BQ9UIF8 2168 aaKnown RBP13.36□□□□□ -0.27
YBX3-213ENST00000542641 A0A0G2JMZ2 1700 aa13.36□□□□□ -0.27
YBX3-213ENST00000542641 NFIBO00712 420 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 FKTNO75072 461 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 XBP1P17861 261 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 GJB2P29033 226 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 LACTBP83111 547 aaPredicted RBP13.35□□□□□ -0.27
YBX3-213ENST00000542641 NOM1Q5C9Z4 860 aaKnown RBP13.35□□□□□ -0.27
YBX3-213ENST00000542641 MCF2L2Q86YR7 1114 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 ANKRD35Q8N283 1001 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 SPRYD3Q8NCJ5 442 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 CLEC4DQ8WXI8 215 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 SH3GLB2Q9NR46 395 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 VPS54Q9P1Q0 977 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 IVNS1ABPQ9Y6Y0 642 aa13.35□□□□□ -0.27
YBX3-213ENST00000542641 SMCO2A6NFE2 343 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 TNPO2O14787 897 aaKnown RBP13.34□□□□□ -0.27
YBX3-213ENST00000542641 FCER1AP12319 257 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 PSMC4P43686 418 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 FCGRTP55899 365 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 NLRP5P59047 1200 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 KCTD2Q14681 263 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 TYW1BQ6NUM6 668 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 PPP1R18Q6NYC8 613 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 NSMFQ6X4W1 530 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 GPR142Q7Z601 462 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 PLEKHH3Q7Z736 793 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 CCDC148Q8NFR7 591 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 ZNF296Q8WUU4 475 aaPredicted RBP13.34□□□□□ -0.27
YBX3-213ENST00000542641 MMP19Q99542 508 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 PSTPIP2Q9H939 334 aa13.34□□□□□ -0.27
YBX3-213ENST00000542641 COL11A1P12107 1806 aaPredicted RBP13.34□□□□□ -0.27
YBX3-213ENST00000542641 C19orf67A6NJJ6 358 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 HAX1O00165 279 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 FOXN1O15353 648 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 STRNO43815 780 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 CFBP00751 764 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 HSPA1AP0DMV8 641 aaKnown RBP13.33□□□□□ -0.28
YBX3-213ENST00000542641 HSPA1BP0DMV9 641 aaKnown RBP13.33□□□□□ -0.28
YBX3-213ENST00000542641 PTPREP23469 700 aa13.33□□□□□ -0.28
YBX3-213ENST00000542641 MRPL12P52815 198 aaKnown RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms