RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RGS22Q8NE09 1264 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 MPHOSPH6Q99547 160 aaKnown RBP24.06■■□□□ 1.44
VPS28-206ENST00000526734 TSEN34Q9BSV6 310 aaKnown RBP24.06■■□□□ 1.44
VPS28-206ENST00000526734 UBA5Q9GZZ9 404 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 SPC25Q9HBM1 224 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 ANO2Q9NQ90 1003 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 PHF24Q9UPV7 400 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 COLQQ9Y215 455 aaPredicted RBP24.06■■□□□ 1.44
VPS28-206ENST00000526734 CEP290O15078 2479 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 ABCB11O95342 1321 aa24.06■■□□□ 1.44
VPS28-206ENST00000526734 NFIBO00712 420 aa24.05■■□□□ 1.44
VPS28-206ENST00000526734 CDC45O75419 566 aa24.05■■□□□ 1.44
VPS28-206ENST00000526734 BAATQ14032 418 aaPredicted RBP24.05■■□□□ 1.44
VPS28-206ENST00000526734 CHRDL2Q6WN34 429 aa24.05■■□□□ 1.44
VPS28-206ENST00000526734 STOX1Q6ZVD7 989 aa24.05■■□□□ 1.44
VPS28-206ENST00000526734 MB21D2Q8IYB1 491 aaPredicted RBP24.05■■□□□ 1.44
VPS28-206ENST00000526734 MORC4Q8TE76 937 aa24.05■■□□□ 1.44
VPS28-206ENST00000526734 CLEC4DQ8WXI8 215 aa24.05■■□□□ 1.44
VPS28-206ENST00000526734 ALPK3Q96L96 1907 aa24.04■■□□□ 1.44
VPS28-206ENST00000526734 DHX16O60231 1041 aaKnown RBP24.04■■□□□ 1.44
VPS28-206ENST00000526734 ADAMTS4O75173 837 aa24.04■■□□□ 1.44
VPS28-206ENST00000526734 MYCNP04198 464 aaPredicted RBP24.04■■□□□ 1.44
VPS28-206ENST00000526734 TRAF1Q13077 416 aa24.04■■□□□ 1.44
VPS28-206ENST00000526734 CCDC144BQ3MJ40 725 aa24.04■■□□□ 1.44
VPS28-206ENST00000526734 RNF20Q5VTR2 975 aa24.04■■□□□ 1.44
VPS28-206ENST00000526734 RNF207Q6ZRF8 634 aa24.04■■□□□ 1.44
VPS28-206ENST00000526734 KATNBL1Q9H079 304 aa24.04■■□□□ 1.44
VPS28-206ENST00000526734 A0A1W2PPC1 479 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 PTPDC1A2A3K4 754 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 B4DLN1 442 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 KLRF2D3W0D1 207 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 PGK1P00558 417 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 CST5P28325 142 aaPredicted RBP24.03■■□□□ 1.44
VPS28-206ENST00000526734 MRPL12P52815 198 aaKnown RBP24.03■■□□□ 1.44
VPS28-206ENST00000526734 TMEM67Q5HYA8 995 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 C1orf53Q5VUE5 145 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 DNERQ8NFT8 737 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 VTA1Q9NP79 307 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 TAF6LQ9Y6J9 622 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 SYNRGQ9UMZ2 1314 aa24.03■■□□□ 1.44
VPS28-206ENST00000526734 MOXD2PA6NHM9 499 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 ADCYAP1R1P41586 468 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 GRM4Q14833 912 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 SNX17Q15036 470 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 NECTIN1Q15223 517 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 CATIPQ7Z7H3 387 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 FBXO11Q86XK2 927 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 MCF2L2Q86YR7 1114 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 UPF3AQ9H1J1 476 aaKnown RBP24.02■■□□□ 1.44
VPS28-206ENST00000526734 PRO3102Q9H379 93 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 JMJD4Q9H9V9 463 aa24.02■■□□□ 1.44
VPS28-206ENST00000526734 PALM3A6NDB9 673 aaPredicted RBP24.01■■□□□ 1.43
VPS28-206ENST00000526734 SLC27A2O14975 620 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 MCM5P33992 734 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 ALDH5A1P51649 535 aaPredicted RBP24.01■■□□□ 1.43
VPS28-206ENST00000526734 QRICH1Q2TAL8 776 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 USH1GQ495M9 461 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 CREB3L3Q68CJ9 461 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 SLC30A10Q6XR72 485 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 SLC39A5Q6ZMH5 540 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 TMTC2Q8N394 836 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 PCSK9Q8NBP7 692 aaKnown RBP24.01■■□□□ 1.43
VPS28-206ENST00000526734 TMEM87BQ96K49 555 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 MAP3K14Q99558 947 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 CPVLQ9H3G5 476 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 MAD2L2Q9UI95 211 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 MRPL11Q9Y3B7 192 aaKnown RBP24.01■■□□□ 1.43
VPS28-206ENST00000526734 ASTN1O14525 1302 aa24.01■■□□□ 1.43
VPS28-206ENST00000526734 ATN1P54259 1190 aaPredicted RBP24■■□□□ 1.43
VPS28-206ENST00000526734 GJA9P57773 515 aa24■■□□□ 1.43
VPS28-206ENST00000526734 ANTXR2P58335 489 aa24■■□□□ 1.43
VPS28-206ENST00000526734 RTP1P59025 263 aa24■■□□□ 1.43
VPS28-206ENST00000526734 RPS6P62753 249 aaKnown RBP24■■□□□ 1.43
VPS28-206ENST00000526734 NKX3-2P78367 333 aa24■■□□□ 1.43
VPS28-206ENST00000526734 IQSEC1Q6DN90 963 aa24■■□□□ 1.43
VPS28-206ENST00000526734 SKAP1Q86WV1 359 aa24■■□□□ 1.43
VPS28-206ENST00000526734 KLHDC9Q8NEP7 349 aa24■■□□□ 1.43
VPS28-206ENST00000526734 IGDCC4Q8TDY8 1250 aa24■■□□□ 1.43
VPS28-206ENST00000526734 NUP133Q8WUM0 1156 aa24■■□□□ 1.43
VPS28-206ENST00000526734 LENG1Q96BZ8 264 aaPredicted RBP24■■□□□ 1.43
VPS28-206ENST00000526734 AMNQ9BXJ7 453 aa24■■□□□ 1.43
VPS28-206ENST00000526734 ZMYND8Q9ULU4 1186 aaPredicted RBP24■■□□□ 1.43
VPS28-206ENST00000526734 DDAH1O94760 285 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 CALML3P27482 149 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 BMP8BP34820 402 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 TNFAIP2Q03169 654 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 TROAPQ12815 778 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 ERICH6BQ5W0A0 696 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 STAG2Q8N3U4 1231 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 MTMR8Q96EF0 704 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 Q9Y3F1 56 aa23.99■■□□□ 1.43
VPS28-206ENST00000526734 ZBTB5O15062 677 aa23.98■■□□□ 1.43
VPS28-206ENST00000526734 PRC1O43663 620 aa23.98■■□□□ 1.43
VPS28-206ENST00000526734 ACLYP53396 1101 aa23.98■■□□□ 1.43
VPS28-206ENST00000526734 SAMD3Q8N6K7 520 aa23.98■■□□□ 1.43
VPS28-206ENST00000526734 GDF15Q99988 308 aa23.98■■□□□ 1.43
VPS28-206ENST00000526734 VAT1LQ9HCJ6 419 aa23.98■■□□□ 1.43
VPS28-206ENST00000526734 RBM27Q9P2N5 1060 aaKnown RBP23.98■■□□□ 1.43
VPS28-206ENST00000526734 PRKAG2Q9UGJ0 569 aa23.98■■□□□ 1.43
VPS28-206ENST00000526734 LRRC37A2A6NM11 1700 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms