RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 WHAMMQ8TF30 809 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 LMBR1Q8WVP7 490 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 CUL5Q93034 780 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 HINFPQ9BQA5 517 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 TSGA10Q9BZW7 698 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 DBF4Q9UBU7 674 aaPredicted RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 ORC4O43929 436 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 HOXC9P31274 260 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 SKIV2L2P42285 1042 aaKnown RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 ALX1Q15699 326 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 ANKRD23Q86SG2 305 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 GSPT2Q8IYD1 628 aaKnown RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 SPDL1Q96EA4 605 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 RRP36Q96EU6 259 aaKnown RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 TMEM109Q9BVC6 243 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 STIM2Q9P246 746 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 TRPC6Q9Y210 931 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 EPN1Q9Y6I3 576 aaPredicted RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 TMEM2Q9UHN6 1383 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 NHSQ6T4R5 1651 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 PPP1R12BO60237 982 aaPredicted RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 SPAG1Q07617 926 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 PABPC1LQ4VXU2 614 aaKnown RBP9.32□□□□□ -0.92
CSMD1-213ENST00000523488 HDGFL1Q5TGJ6 251 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 PDXDC2PQ6P474 469 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 VPS37DQ86XT2 251 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 FBXO3Q9UK99 471 aa9.32□□□□□ -0.92
CSMD1-213ENST00000523488 SYNRGQ9UMZ2 1314 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 PI4KAP2A4QPH2 592 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 RCCD1A6NED2 376 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 WNT7AO00755 349 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 BAG3O95817 575 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 TRMT44Q8IYL2 757 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 PI4KAP1Q8N8J0 262 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 SAAL1Q96ER3 474 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 LEMD3Q9Y2U8 911 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 PES1O00541 588 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 IPO7O95373 1038 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 FMNL1O95466 1100 aaPredicted RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 SRGNP10124 158 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 IMPDH2P12268 514 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 HDLBPQ00341 1268 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 CCDC38Q502W7 563 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 SPECC1Q5M775 1068 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 TTC39AQ5SRH9 613 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 KLHL10Q6JEL2 608 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 ATG9AQ7Z3C6 839 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 SH2D4AQ9H788 454 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 CHPF2Q9P2E5 772 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 RPL26L1Q9UNX3 145 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 SCN4AP35499 1836 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 NCKAP5LQ9HCH0 1330 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 RIC1Q4ADV7 1423 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 A0A087X0B3 334 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 LGALS16A8MUM7 142 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 FOXN1O15353 648 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 RANBP6O60518 1105 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 PENKP01210 267 aaPredicted RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 KRT31Q15323 416 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 TCP11X2Q5H9J9 407 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 GALNT15Q8N3T1 639 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 ENDOVQ8N8Q3 282 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 SPATA4Q8NEY3 305 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 BICD1Q96G01 975 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 ERGIC2Q96RQ1 377 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 OSBPL9Q96SU4 736 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 NUCKS1Q9H1E3 243 aaKnown RBP9.31□□□□□ -0.92
CSMD1-213ENST00000523488 KIF9Q9HAQ2 790 aa9.31□□□□□ -0.92
CSMD1-213ENST00000523488 FOCADQ5VW36 1801 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ENC1O14682 589 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ZNF263O14978 683 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 PDHBP11177 359 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 CCNB1P14635 433 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 PDE6BP35913 854 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 LIFRP42702 1097 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ROR2Q01974 943 aaKnown RBP9.3□□□□□ -0.92
CSMD1-213ENST00000523488 CCDC15Q0P6D6 951 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 KCTD16Q68DU8 428 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 PAIP2Q9BPZ3 127 aaKnown RBP9.3□□□□□ -0.92
CSMD1-213ENST00000523488 SLF1Q9BQI6 1058 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 RIPOR2Q9Y4F9 1068 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 MMP1P03956 469 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 CSB-PGBD3P0DP91 1061 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ABL2P42684 1182 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ERMARDQ5T6L9 678 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ANKS4BQ8N8V4 417 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 FAM136AQ96C01 138 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 NUP88Q99567 741 aaPredicted RBP9.3□□□□□ -0.92
CSMD1-213ENST00000523488 THAP9Q9H5L6 903 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 BAIAP2L1Q9UHR4 511 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 PA2G4Q9UQ80 394 aaKnown RBP9.3□□□□□ -0.92
CSMD1-213ENST00000523488 TNS2Q63HR2 1409 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 BUB1BO60566 1050 aaPredicted RBP9.3□□□□□ -0.92
CSMD1-213ENST00000523488 VAV2P52735 878 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 MTA1Q13330 715 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 KCNB1Q14721 858 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 UAP1Q16222 522 aaPredicted RBP9.3□□□□□ -0.92
CSMD1-213ENST00000523488 SESTD1Q86VW0 696 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 IGDCC4Q8TDY8 1250 aa9.3□□□□□ -0.92
CSMD1-213ENST00000523488 ATXN2LQ8WWM7 1075 aaKnown RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms