RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CLEC4DQ8WXI8 215 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 TMEM106CQ9BVX2 250 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 UNC93B1Q9H1C4 597 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 ZSWIM6Q9HCJ5 1215 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 NID2Q14112 1375 aa18.49■□□□□ 0.55
UPF3A-208ENST00000484246 CYTH3O43739 400 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 PGK2P07205 417 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 TRIM32Q13049 653 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 C8orf34Q49A92 452 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 MUM1L1Q5H9M0 696 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 MAMDC4Q6UXC1 1216 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 ANKRD35Q8N283 1001 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 RGS22Q8NE09 1264 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 NUP133Q8WUM0 1156 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 DDX11Q96FC9 970 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 FGD4Q96M96 766 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 MYL10Q9BUA6 226 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.48■□□□□ 0.55
UPF3A-208ENST00000484246 HMX1Q9NP08 348 aaPredicted RBP18.48■□□□□ 0.55
UPF3A-208ENST00000484246 HOMER2Q9NSB8 354 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 DOCK3Q8IZD9 2030 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 ABCB11O95342 1321 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 SYNGAP1Q96PV0 1343 aa18.48■□□□□ 0.55
UPF3A-208ENST00000484246 POTEFA5A3E0 1075 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 ZBTB5O15062 677 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 CYBAP13498 195 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 GJA8P48165 433 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 SOX10P56693 466 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 CACNB2Q08289 660 aaPredicted RBP18.47■□□□□ 0.55
UPF3A-208ENST00000484246 TRAF1Q13077 416 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 TCEANC2Q96MN5 208 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 RNF208Q9H0X6 261 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 CYP39A1Q9NYL5 469 aa18.47■□□□□ 0.55
UPF3A-208ENST00000484246 LOC102724159A0A0B4J2E5 919 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 NFIBO00712 420 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 TAL1P17542 331 aaPredicted RBP18.46■□□□□ 0.55
UPF3A-208ENST00000484246 CASTP20810 708 aaKnown RBP18.46■□□□□ 0.55
UPF3A-208ENST00000484246 EVCP57679 992 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 GHRHRQ02643 423 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 PWP2Q15269 919 aaKnown RBP18.46■□□□□ 0.55
UPF3A-208ENST00000484246 SYNE3Q6ZMZ3 975 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 TMTC3Q6ZXV5 915 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 RUFY3Q7L099 469 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 FBXO11Q86XK2 927 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 FANCBQ8NB91 859 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 TINF2Q9BSI4 451 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 AMNQ9BXJ7 453 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 CRISPLD2Q9H0B8 497 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 RBM28Q9NW13 759 aaKnown RBP18.46■□□□□ 0.55
UPF3A-208ENST00000484246 BRPF3Q9ULD4 1205 aa18.46■□□□□ 0.55
UPF3A-208ENST00000484246 POTEB2H3BUK9 544 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 ZBTB43O43298 467 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 DHX16O60231 1041 aaKnown RBP18.45■□□□□ 0.54
UPF3A-208ENST00000484246 CPA1P15085 419 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 CYP2C19P33261 490 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 SLC4A3P48751 1232 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 PPP2R5BQ15173 497 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 MICU3Q86XE3 530 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 SHISA4Q96DD7 197 aa18.45■□□□□ 0.54
UPF3A-208ENST00000484246 PNMA6FA0A0J9YX94 578 aa18.44■□□□□ 0.54
UPF3A-208ENST00000484246 KLF18A0A0U1RQI7 1052 aa18.44■□□□□ 0.54
UPF3A-208ENST00000484246 PPP1R11O60927 126 aaPredicted RBP18.44■□□□□ 0.54
UPF3A-208ENST00000484246 Q6ZUG5 572 aa18.44■□□□□ 0.54
UPF3A-208ENST00000484246 U2AF1L4Q8WU68 220 aaKnown RBP18.44■□□□□ 0.54
UPF3A-208ENST00000484246 MRPL11Q9Y3B7 192 aaKnown RBP18.44■□□□□ 0.54
UPF3A-208ENST00000484246 CYP46A1Q9Y6A2 500 aa18.44■□□□□ 0.54
UPF3A-208ENST00000484246 MSCO60682 206 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 PLEKHA8P1O95397 391 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 SGPL1O95470 568 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 RTN1Q16799 776 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 USH1GQ495M9 461 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 NSMFQ6X4W1 530 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 SRBD1Q8N5C6 995 aaKnown RBP18.43■□□□□ 0.54
UPF3A-208ENST00000484246 SAMD3Q8N6K7 520 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 TRPV1Q8NER1 839 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 MORC4Q8TE76 937 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 BRF1Q92994 677 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 PIGSQ96S52 555 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 VAT1LQ9HCJ6 419 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 ASTN1O14525 1302 aa18.43■□□□□ 0.54
UPF3A-208ENST00000484246 SOWAHBA6NEL2 793 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 SEC24BO95487 1268 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 MYCP01106 439 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-208ENST00000484246 RXRAP19793 462 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 CCND3P30281 292 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-208ENST00000484246 FGD1P98174 961 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 CNTN2Q02246 1040 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 FUT2Q10981 343 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 BAATQ14032 418 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-208ENST00000484246 RNF207Q6ZRF8 634 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 MCF2L2Q86YR7 1114 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 DEFB118Q96PH6 123 aa18.42■□□□□ 0.54
UPF3A-208ENST00000484246 FAM217BQ9NTX9 383 aaPredicted RBP18.42■□□□□ 0.54
UPF3A-208ENST00000484246 ASB14A6NK59 587 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 GOLGA8AA7E2F4 631 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 GOLGA8BA8MQT2 603 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 OPLAHO14841 1288 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 SEPT4O43236 478 aa18.41■□□□□ 0.54
UPF3A-208ENST00000484246 SNAI1O95863 264 aaPredicted RBP18.41■□□□□ 0.54
UPF3A-208ENST00000484246 EN2P19622 333 aaPredicted RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms