RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 EPHX2P34913 555 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 SYKP43405 635 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 ZYXQ15942 572 aaKnown RBP20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 INF2Q27J81 1249 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 RASGRP4Q8TDF6 673 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 C19orf81C9J6K1 198 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 PPP1R11O60927 126 aaPredicted RBP20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 FDX1P10109 184 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 MCM7P33993 719 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 NDUFA8P51970 172 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 PTGDRQ13258 359 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 AP3B2Q13367 1082 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 SNW1Q13573 536 aaKnown RBP20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 CAMK4Q16566 473 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 PNMA8AQ86V59 439 aaPredicted RBP20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 KLRG1Q96E93 195 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 SDF4Q9BRK5 362 aa20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 BIN2Q9UBW5 565 aaPredicted RBP20.67■□□□□ 0.9
CCDC88C-203ENST00000389856 FOSP01100 380 aaPredicted RBP20.66■□□□□ 0.9
CCDC88C-203ENST00000389856 JAKMIP3Q5VZ66 844 aa20.66■□□□□ 0.9
CCDC88C-203ENST00000389856 SHC4Q6S5L8 630 aa20.66■□□□□ 0.9
CCDC88C-203ENST00000389856 ZNF280CQ8ND82 737 aa20.66■□□□□ 0.9
CCDC88C-203ENST00000389856 NAP1L5Q96NT1 182 aaPredicted RBP20.66■□□□□ 0.9
CCDC88C-203ENST00000389856 RANBP17Q9H2T7 1088 aaKnown RBP20.66■□□□□ 0.9
CCDC88C-203ENST00000389856 GOLGB1Q14789 3259 aaKnown RBP20.66■□□□□ 0.9
CCDC88C-203ENST00000389856 PTPRAP18433 802 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 TXLNAP40222 546 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 PRPHP41219 470 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 IREB2P48200 963 aaKnown RBP20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 ZRSR1Q15695 479 aaKnown RBP20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 STX1AQ16623 288 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 ANO6Q4KMQ2 910 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 KRT26Q7Z3Y9 468 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 PRPF38AQ8NAV1 312 aaKnown RBP20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 KIFC2Q96AC6 838 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 KCNH3Q9ULD8 1083 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 HPSEQ9Y251 543 aa20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 POLR2AP24928 1970 aaKnown RBP20.65■□□□□ 0.9
CCDC88C-203ENST00000389856 ZNF202O95125 648 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 TPM2P07951 284 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 LONP1P36776 959 aaKnown RBP20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 BACE1P56817 501 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 KANK3Q6NY19 840 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 CKAP2LQ8IYA6 745 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 TBCKQ8TEA7 893 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 CLIC6Q96NY7 704 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 SLF1Q9BQI6 1058 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 CBX8Q9HC52 389 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 MRPL11Q9Y3B7 192 aaKnown RBP20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 CTDP1Q9Y5B0 961 aaPredicted RBP20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 CSADQ9Y600 493 aa20.64■□□□□ 0.9
CCDC88C-203ENST00000389856 GCFC2P16383 781 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 CLK2P49760 499 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 MAP3K9P80192 1104 aa20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 LETM2Q2VYF4 491 aa20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 NOM1Q5C9Z4 860 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 DTHD1Q6ZMT9 781 aa20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 ELOA2Q8IYF1 753 aaPredicted RBP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 RBM46Q8TBY0 533 aaKnown RBP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 GLIS2Q9BZE0 524 aaPredicted RBP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.64■□□□□ 0.89
CCDC88C-203ENST00000389856 ABCB11O95342 1321 aa20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 SSC5DA1L4H1 1573 aa20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 CCNT1O60563 726 aaKnown RBP20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 SPP2Q13103 211 aa20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 MTMR2Q13614 643 aa20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 KIAA1755Q5JYT7 1200 aa20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 PRAMEF18Q5VWM3 479 aa20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 TMOD4Q9NZQ9 345 aa20.63■□□□□ 0.89
CCDC88C-203ENST00000389856 SPDYE3A6NKU9 549 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 NEMFO60524 1076 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 ZNF165P49910 485 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 USH1GQ495M9 461 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 ZKSCAN4Q969J2 545 aaPredicted RBP20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 C12orf42Q96LP6 360 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 TANGO6Q9C0B7 1094 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 CSRNP2Q9H175 543 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 EHMT1Q9H9B1 1298 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 ANO10Q9NW15 660 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 WDR90Q96KV7 1748 aa20.62■□□□□ 0.89
CCDC88C-203ENST00000389856 VWA3AA6NCI4 1184 aa20.61■□□□□ 0.89
CCDC88C-203ENST00000389856 ADAMTS3O15072 1205 aa20.61■□□□□ 0.89
CCDC88C-203ENST00000389856 CCDC84Q86UT8 332 aaPredicted RBP20.61■□□□□ 0.89
CCDC88C-203ENST00000389856 TMEM260Q9NX78 707 aa20.61■□□□□ 0.89
CCDC88C-203ENST00000389856 ZHX2Q9Y6X8 837 aa20.61■□□□□ 0.89
CCDC88C-203ENST00000389856 PIK3CDO00329 1044 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 USP2O75604 605 aaPredicted RBP20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 OR52Z1P0C646 297 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 VCAM1P19320 739 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 PPP4R3AQ6IN85 833 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 AK8Q96MA6 479 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 RAB34Q9BZG1 259 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 TAF1DQ9H5J8 278 aaPredicted RBP20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 ADM5C9JUS6 153 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 ZBED4O75132 1171 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 ICAM1P05362 532 aa20.6■□□□□ 0.89
CCDC88C-203ENST00000389856 CDC25BP30305 580 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms