RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 FOXB2Q5VYV0 432 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 E4F1Q66K89 784 aaPredicted RBP4.95□□□□□ -1.62
HMGB1-201ENST00000326004 TP53INP2Q8IXH6 220 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 NLGN1Q8N2Q7 840 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 NAT16Q8N8M0 369 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 TMEM145Q8NBT3 493 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 PI4K2BQ8TCG2 481 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 KISS1RQ969F8 398 aaPredicted RBP4.95□□□□□ -1.62
HMGB1-201ENST00000326004 OSBP2Q969R2 916 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 EXOC2Q96KP1 924 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 PTCHD1Q96NR3 888 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 KANSL2Q9H9L4 492 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 FANCLQ9NW38 375 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 ERVK13-1Q9NX77 482 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 SLAMF8Q9P0V8 285 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 TNFRSF10DQ9UBN6 386 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 TMEM59LQ9UK28 342 aa4.95□□□□□ -1.62
HMGB1-201ENST00000326004 MRPS23Q9Y3D9 190 aaKnown RBP4.95□□□□□ -1.62
HMGB1-201ENST00000326004 SCO2A0A1W2PP80 73 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 ESYT3A0FGR9 886 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 CLSTN1O94985 981 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 CANXP27824 592 aaKnown RBP4.94□□□□□ -1.62
HMGB1-201ENST00000326004 KIR2DL1P43626 348 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-201ENST00000326004 KIR2DL2P43627 348 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-201ENST00000326004 CHRNEQ04844 493 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 CYP4F3Q08477 520 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 PLCL1Q15111 1095 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 TCEA2Q15560 299 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 TESK1Q15569 626 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 SF1Q15637 639 aaKnown RBP4.94□□□□□ -1.62
HMGB1-201ENST00000326004 FAM209AQ5JX71 171 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 ARTNQ5T4W7 220 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 YOD1Q5VVQ6 348 aaPredicted RBP4.94□□□□□ -1.62
HMGB1-201ENST00000326004 HLA-DQA1Q5Y7H0 255 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 IQCEQ6IPM2 695 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 C16orf86Q6ZW13 317 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 ANKS4BQ8N8V4 417 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 KREMEN2Q8NCW0 462 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 NPLOC4Q8TAT6 608 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 FRS2Q8WU20 508 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 LINC01599Q8WXQ3 324 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 C1orf159Q96HA4 380 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 MAP6Q96JE9 813 aa4.94□□□□□ -1.62
HMGB1-201ENST00000326004 LOC105371045A0A1W2PR82 267 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 MEFVO15553 781 aaPredicted RBP4.93□□□□□ -1.62
HMGB1-201ENST00000326004 ZGLP1P0C6A0 271 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 L1CAMP32004 1257 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 KCNAB2Q13303 367 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 PLEKHG4Q58EX7 1191 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 RALGPS1Q5JS13 557 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 RSPO2Q6UXX9 243 aaPredicted RBP4.93□□□□□ -1.62
HMGB1-201ENST00000326004 ZPBP2Q6X784 338 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 SPPL2CQ8IUH8 684 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 PPIL6Q8IXY8 311 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 OXR1Q8N573 874 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 PDZD8Q8NEN9 1154 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 MMP19Q99542 508 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 G6PC3Q9BUM1 346 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 MRPL4Q9BYD3 311 aaKnown RBP4.93□□□□□ -1.62
HMGB1-201ENST00000326004 ADAMTS10Q9H324 1103 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 GPRC5CQ9NQ84 441 aa4.93□□□□□ -1.62
HMGB1-201ENST00000326004 NPHP3-ACAD11A0A0J9YXS1 232 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 A0A1W2PQ45 241 aaPredicted RBP4.92□□□□□ -1.62
HMGB1-201ENST00000326004 A0A1W2PQY0 241 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 FITM1A5D6W6 292 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 FADS2P1A8MWK0 482 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 PLD2O14939 933 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 ADAMTS4O75173 837 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 PLS3P13797 630 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 GDNFP39905 211 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 GABREP78334 506 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 PRSS53Q2L4Q9 553 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 FNDC3BQ53EP0 1204 aaKnown RBP4.92□□□□□ -1.62
HMGB1-201ENST00000326004 TAF7LQ5H9L4 462 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 MAMDC2Q7Z304 686 aaPredicted RBP4.92□□□□□ -1.62
HMGB1-201ENST00000326004 DCAF4Q8WV16 495 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 HHIPL1Q96JK4 782 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 FEZ1Q99689 392 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 ZFYVE21Q9BQ24 234 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 NCOA5Q9HCD5 579 aaKnown RBP4.92□□□□□ -1.62
HMGB1-201ENST00000326004 ZFP64Q9NPA5 681 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 CLEC1BQ9P126 229 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 NPFFR2Q9Y5X5 522 aa4.92□□□□□ -1.62
HMGB1-201ENST00000326004 EFCAB14O75071 495 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 ASMTLO95671 621 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 RAC2P15153 192 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 LTBRP36941 435 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 NR0B2Q15466 257 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 TRIM61Q5EBN2 209 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 EGFLAMQ63HQ2 1017 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 DENND5AQ6IQ26 1287 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 STYK1Q6J9G0 422 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 USP53Q70EK8 1073 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 KIAA0907Q7Z7F0 614 aaPredicted RBP4.91□□□□□ -1.62
HMGB1-201ENST00000326004 LILRA2Q8N149 483 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 TMEM52Q8NDY8 209 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 DIO2Q92813 273 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 PTPRN2Q92932 1015 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 PRDM7Q9NQW5 492 aa4.91□□□□□ -1.62
HMGB1-201ENST00000326004 GPR27Q9NS67 375 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms