RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 FOXP2O15409 715 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 CABYRO75952 493 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 TIMP1P01033 207 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 HSPD1P10809 573 aaKnown RBP16.53■□□□□ 0.24
TPM1-202ENST00000288398 HAND2P61296 217 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 NMIQ13287 307 aaPredicted RBP16.53■□□□□ 0.24
TPM1-202ENST00000288398 PPIGQ13427 754 aaKnown RBP eCLIP16.53■□□□□ 0.241e-7■■□□□ 14.5
TPM1-202ENST00000288398 B4GALNT3Q6L9W6 998 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 TLK2Q86UE8 772 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 TMEM199Q8N511 208 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 GPCPD1Q9NPB8 672 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 CYP39A1Q9NYL5 469 aa16.53■□□□□ 0.24
TPM1-202ENST00000288398 ZMYM6O95789 1325 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 FRMPD2Q68DX3 1309 aaPredicted RBP16.52■□□□□ 0.24
TPM1-202ENST00000288398 PTPDC1A2A3K4 754 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 SOWAHBA6NEL2 793 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 SLC16A2P36021 539 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 FSCN1Q16658 493 aaKnown RBP16.52■□□□□ 0.24
TPM1-202ENST00000288398 MUM1L1Q5H9M0 696 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 CCSAPQ6IQ19 270 aaPredicted RBP16.52■□□□□ 0.24
TPM1-202ENST00000288398 EEPD1Q7L9B9 569 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 GUCD1Q96NT3 240 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 TMEM47Q9BQJ4 181 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 DIAPH3Q9NSV4 1193 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 TCP11L1Q9NUJ3 509 aa16.52■□□□□ 0.24
TPM1-202ENST00000288398 DYNC1LI2O43237 492 aaPredicted RBP16.51■□□□□ 0.23
TPM1-202ENST00000288398 ADCY6O43306 1168 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 FGRP09769 529 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 ITGB8P26012 769 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 BEX3Q00994 111 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 AKNAD1Q5T1N1 836 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 IQSEC1Q6DN90 963 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 RASGRP2Q7LDG7 609 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 ESR2Q92731 530 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 TTC14Q96N46 770 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 RANBP17Q9H2T7 1088 aaKnown RBP16.51■□□□□ 0.23
TPM1-202ENST00000288398 VTA1Q9NP79 307 aa16.51■□□□□ 0.23
TPM1-202ENST00000288398 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.5■□□□□ 0.23
TPM1-202ENST00000288398 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.5■□□□□ 0.23
TPM1-202ENST00000288398 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.5■□□□□ 0.23
TPM1-202ENST00000288398 HIP1O00291 1037 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 ZNF213O14771 459 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 CCDC178Q5BJE1 867 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 TTBK2Q6IQ55 1244 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 MFSD5Q6N075 450 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 CXCL17Q6UXB2 119 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 KIAA1211Q6ZU35 1233 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 ZNF589Q86UQ0 364 aaPredicted RBP16.5■□□□□ 0.23
TPM1-202ENST00000288398 FBXO16Q8IX29 292 aaPredicted RBP16.5■□□□□ 0.23
TPM1-202ENST00000288398 CDX2Q99626 313 aaPredicted RBP16.5■□□□□ 0.23
TPM1-202ENST00000288398 SEZ6LQ9BYH1 1024 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 PPP1R12CQ9BZL4 782 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 KATNBL1Q9H079 304 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 SEMA6BQ9H3T3 888 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 TBX21Q9UL17 535 aa16.5■□□□□ 0.23
TPM1-202ENST00000288398 COL6A3P12111 3177 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 TMEM265A0A087WTH1 108 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 B4DLN1 442 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 SDSP20132 328 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 CALML3P27482 149 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 NOVP48745 357 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 NT5C2P49902 561 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 CDK7P50613 346 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 MRPL12P52815 198 aaKnown RBP16.49■□□□□ 0.23
TPM1-202ENST00000288398 EPHB4P54760 987 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 IRX5P78411 483 aaPredicted RBP16.49■□□□□ 0.23
TPM1-202ENST00000288398 BAATQ14032 418 aaPredicted RBP16.49■□□□□ 0.23
TPM1-202ENST00000288398 BRDTQ58F21 947 aaPredicted RBP16.49■□□□□ 0.23
TPM1-202ENST00000288398 BTNL9Q6UXG8 535 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 CHD1LQ86WJ1 897 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 IQCA1Q86XH1 822 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 MTIF3Q9H2K0 278 aaKnown RBP16.49■□□□□ 0.23
TPM1-202ENST00000288398 Q9Y3F1 56 aa16.49■□□□□ 0.23
TPM1-202ENST00000288398 RAD50Q92878 1312 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 MCM3APO60318 1980 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 LOC102724159A0A0B4J2E5 919 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 PDHBP11177 359 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 FOSL2P15408 326 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 SMPD1P17405 629 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 ALDH5A1P51649 535 aaPredicted RBP16.48■□□□□ 0.23
TPM1-202ENST00000288398 NKX3-2P78367 333 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 PDE4DQ08499 809 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 ITGA7Q13683 1181 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 PWP2Q15269 919 aaKnown RBP16.48■□□□□ 0.23
TPM1-202ENST00000288398 GPATCH4Q5T3I0 446 aaKnown RBP16.48■□□□□ 0.23
TPM1-202ENST00000288398 PSRC1Q6PGN9 363 aaPredicted RBP16.48■□□□□ 0.23
TPM1-202ENST00000288398 RNF207Q6ZRF8 634 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.48■□□□□ 0.23
TPM1-202ENST00000288398 FAM126BQ8IXS8 530 aa16.48■□□□□ 0.23
TPM1-202ENST00000288398 GPHNQ9NQX3 736 aaPredicted RBP16.48■□□□□ 0.23
TPM1-202ENST00000288398 GNEQ9Y223 722 aaKnown RBP16.48■□□□□ 0.23
TPM1-202ENST00000288398 ZNF543Q08ER8 600 aa16.47■□□□□ 0.23
TPM1-202ENST00000288398 CWC27Q6UX04 472 aaKnown RBP16.47■□□□□ 0.23
TPM1-202ENST00000288398 SMC5Q8IY18 1101 aa16.47■□□□□ 0.23
TPM1-202ENST00000288398 MAFAQ8NHW3 353 aaPredicted RBP16.47■□□□□ 0.23
TPM1-202ENST00000288398 MYLIPQ8WY64 445 aa16.47■□□□□ 0.23
TPM1-202ENST00000288398 HIPK3Q9H422 1215 aa16.47■□□□□ 0.23
TPM1-202ENST00000288398 KAT14Q9H8E8 782 aa16.47■□□□□ 0.23
TPM1-202ENST00000288398 PDGFCQ9NRA1 345 aa16.47■□□□□ 0.23
TPM1-202ENST00000288398 NFIBO00712 420 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms