RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 FMR1Q06787 632 aaKnown RBP eCLIP25.78■■□□□ 1.72
CDX1-201ENST00000231656 IKQ13123 557 aaPredicted RBP25.78■■□□□ 1.72
CDX1-201ENST00000231656 TYW1BQ6NUM6 668 aa25.78■■□□□ 1.72
CDX1-201ENST00000231656 HEATR3Q7Z4Q2 680 aa25.78■■□□□ 1.72
CDX1-201ENST00000231656 BARHL2Q9NY43 387 aa25.78■■□□□ 1.72
CDX1-201ENST00000231656 A0A087WWV3 80 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 BMP15O95972 392 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 STAT2P52630 851 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 DGKZQ13574 1117 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 ANKRD13AQ8IZ07 590 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 PCDHA4Q9UN74 947 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 PNMA6FA0A0J9YX94 578 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 TRAPPC10P48553 1259 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 TTC38Q5R3I4 469 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 SYDE2Q5VT97 1194 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 ARMC9Q7Z3E5 817 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 BLIDQ8IZY5 108 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 FAM177A1Q8N128 213 aaPredicted RBP25.77■■□□□ 1.72
CDX1-201ENST00000231656 EMILIN3Q9NT22 766 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 AFG3L2Q9Y4W6 797 aa25.77■■□□□ 1.72
CDX1-201ENST00000231656 STXBP3O00186 592 aa25.76■■□□□ 1.71
CDX1-201ENST00000231656 ZBTB5O15062 677 aa25.76■■□□□ 1.71
CDX1-201ENST00000231656 DAGLBQ8NCG7 672 aa25.76■■□□□ 1.71
CDX1-201ENST00000231656 M0R2N6 131 aa25.75■■□□□ 1.71
CDX1-201ENST00000231656 WDR46O15213 610 aaKnown RBP25.75■■□□□ 1.71
CDX1-201ENST00000231656 SPECC1Q5M775 1068 aa25.75■■□□□ 1.71
CDX1-201ENST00000231656 KRBA2Q6ZNG9 492 aa25.75■■□□□ 1.71
CDX1-201ENST00000231656 CLMNQ96JQ2 1002 aa25.75■■□□□ 1.71
CDX1-201ENST00000231656 FAM13BQ9NYF5 915 aa25.75■■□□□ 1.71
CDX1-201ENST00000231656 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.75■■□□□ 1.71
CDX1-201ENST00000231656 PLA2G6O60733 806 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 PLCB2Q00722 1185 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 LONRF3Q496Y0 759 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 PIK3AP1Q6ZUJ8 805 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 ELOA2Q8IYF1 753 aaPredicted RBP25.74■■□□□ 1.71
CDX1-201ENST00000231656 CCDC148Q8NFR7 591 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 CHURC1Q8WUH1 139 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 ZNF408Q9H9D4 720 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.74■■□□□ 1.71
CDX1-201ENST00000231656 PTPRFP10586 1907 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 C19orf81C9J6K1 198 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 GALNT17Q6IS24 598 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 CEP57L1Q8IYX8 460 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 CSRNP2Q9H175 543 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 ELP3Q9H9T3 547 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 TUBE1Q9UJT0 475 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 FEM1BQ9UK73 627 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 PRR12Q9ULL5 1215 aa25.74■■□□□ 1.71
CDX1-201ENST00000231656 hCG_1984214I3L0E3 225 aa25.73■■□□□ 1.71
CDX1-201ENST00000231656 PPP1R11O60927 126 aaPredicted RBP25.73■■□□□ 1.71
CDX1-201ENST00000231656 VCAM1P19320 739 aa25.73■■□□□ 1.71
CDX1-201ENST00000231656 CLCN1P35523 988 aa25.73■■□□□ 1.71
CDX1-201ENST00000231656 ZNF174Q15697 407 aa25.73■■□□□ 1.71
CDX1-201ENST00000231656 CDC37Q16543 378 aaPredicted RBP25.73■■□□□ 1.71
CDX1-201ENST00000231656 ZNF713Q8N859 430 aaPredicted RBP25.73■■□□□ 1.71
CDX1-201ENST00000231656 CNKSR2Q8WXI2 1034 aa25.73■■□□□ 1.71
CDX1-201ENST00000231656 PTMAP06454 111 aaKnown RBP25.72■■□□□ 1.71
CDX1-201ENST00000231656 HMGCS2P54868 508 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 NAPAP54920 295 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 NLRP12P59046 1061 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 ATP2C1P98194 919 aaPredicted RBP25.72■■□□□ 1.71
CDX1-201ENST00000231656 QRICH1Q2TAL8 776 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 FAM160B2Q86V87 743 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 DHX40Q8IX18 779 aaKnown RBP25.72■■□□□ 1.71
CDX1-201ENST00000231656 FERMT2Q96AC1 680 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 DPCR1Q3MIW9 517 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 LDLRAD1Q5T700 205 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 ERO1BQ86YB8 467 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 CNNM3Q8NE01 707 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 CCDC12Q8WUD4 166 aaPredicted RBP25.72■■□□□ 1.71
CDX1-201ENST00000231656 COA7Q96BR5 231 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 C12orf42Q96LP6 360 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 FBXO28Q9NVF7 368 aa25.72■■□□□ 1.71
CDX1-201ENST00000231656 SNAP25P60880 206 aa25.71■■□□□ 1.71
CDX1-201ENST00000231656 PPATQ06203 517 aa25.71■■□□□ 1.71
CDX1-201ENST00000231656 RBM46Q8TBY0 533 aaKnown RBP25.71■■□□□ 1.71
CDX1-201ENST00000231656 KIFC2Q96AC6 838 aa25.71■■□□□ 1.71
CDX1-201ENST00000231656 BPIFA3Q9BQP9 254 aa25.71■■□□□ 1.71
CDX1-201ENST00000231656 NAT10Q9H0A0 1025 aaKnown RBP25.71■■□□□ 1.71
CDX1-201ENST00000231656 ZKSCAN5Q9Y2L8 839 aa25.71■■□□□ 1.71
CDX1-201ENST00000231656 USP49Q70CQ1 688 aa25.7■■□□□ 1.7
CDX1-201ENST00000231656 ZMYND12Q9H0C1 365 aa25.7■■□□□ 1.7
CDX1-201ENST00000231656 PCDHA6Q9UN73 950 aa25.7■■□□□ 1.7
CDX1-201ENST00000231656 PCDHA8Q9Y5H6 950 aa25.7■■□□□ 1.7
CDX1-201ENST00000231656 SPDYE5A6NIY4 337 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 GOLGA6L19H0YKK7 550 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 MDM2Q00987 491 aaPredicted RBP25.69■■□□□ 1.7
CDX1-201ENST00000231656 PTGDRQ13258 359 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 PNOCQ13519 176 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 ZRSR1Q15695 479 aaKnown RBP25.69■■□□□ 1.7
CDX1-201ENST00000231656 SH3D19Q5HYK7 790 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 CHADLQ6NUI6 762 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 RASGRP4Q8TDF6 673 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 OTUD5Q96G74 571 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 TANGO6Q9C0B7 1094 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 RPAP3Q9H6T3 665 aaPredicted RBP25.69■■□□□ 1.7
CDX1-201ENST00000231656 POLR2DO15514 142 aaKnown RBP25.69■■□□□ 1.7
CDX1-201ENST00000231656 PLA2G4DQ86XP0 818 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 TMOD4Q9NZQ9 345 aa25.69■■□□□ 1.7
CDX1-201ENST00000231656 PARP14Q460N5 1801 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms