RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	DHH1	P39517	506 aa	Known RBP	13.87	□□□□□ -0.19
DEP1	YAL013W	STB2	P46679	850 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	YET2	Q04210	160 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	YPR202W	Q08993	238 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	GNT1	Q12096	491 aa		13.87	□□□□□ -0.19
DEP1	YAL013W	CPA1	P07258	411 aa	Known RBP	13.86	□□□□□ -0.19
DEP1	YAL013W	SWI5	P08153	709 aa		13.86	□□□□□ -0.19
DEP1	YAL013W	GUK1	P15454	187 aa	Known RBP	13.86	□□□□□ -0.19
DEP1	YAL013W	PWP1	P21304	576 aa	Known RBP	13.86	□□□□□ -0.19
DEP1	YAL013W	BUB2	P26448	306 aa	Predicted RBP	13.86	□□□□□ -0.19
DEP1	YAL013W	CYC2	P38909	366 aa		13.86	□□□□□ -0.19
DEP1	YAL013W	NPT1	P39683	429 aa	Known RBP	13.86	□□□□□ -0.19
DEP1	YAL013W	SCS2	P40075	244 aa	Known RBP	13.86	□□□□□ -0.19
DEP1	YAL013W	RLP7	P40693	322 aa	Known RBP	13.86	□□□□□ -0.19
DEP1	YAL013W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	13.86	□□□□□ -0.19	not detected
DEP1	YAL013W	CDA1	Q06702	301 aa		13.86	□□□□□ -0.19
DEP1	YAL013W	YIG1	Q08956	461 aa		13.86	□□□□□ -0.19
DEP1	YAL013W	MCD1	Q12158	566 aa		13.86	□□□□□ -0.19
DEP1	YAL013W	MET8	P15807	274 aa		13.85	□□□□□ -0.19
DEP1	YAL013W	SSE1	P32589	693 aa	Known RBP	13.85	□□□□□ -0.19
DEP1	YAL013W	GMH1	P36125	273 aa		13.85	□□□□□ -0.19
DEP1	YAL013W	GDH3	P39708	457 aa		13.85	□□□□□ -0.19
DEP1	YAL013W	MET18	P40469	1032 aa		13.85	□□□□□ -0.19
DEP1	YAL013W	YRB1	P41920	201 aa	Known RBP	13.85	□□□□□ -0.19
DEP1	YAL013W	FAP1	P53971	965 aa		13.85	□□□□□ -0.19
DEP1	YAL013W	REX2	P54964	269 aa	Known RBP	13.85	□□□□□ -0.19
DEP1	YAL013W	YLR413W	Q06689	675 aa		13.85	□□□□□ -0.19
DEP1	YAL013W	YLR049C	Q12110	428 aa		13.85	□□□□□ -0.19
DEP1	YAL013W	CMR1	Q12510	522 aa	Known RBP	13.85	□□□□□ -0.19
DEP1	YAL013W	YSR3	P23501	404 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	GUT1	P32190	709 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	DGR2	P32330	852 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	PTC1	P35182	281 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	YEN1	P40028	759 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	IAH1	P41734	238 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	CCT7	P42943	550 aa	Known RBP	13.84	□□□□□ -0.19
DEP1	YAL013W	NPY1	P53164	384 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	AQR1	P53943	586 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	TGL2	P54857	326 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	RSC3	Q06639	885 aa		13.84	□□□□□ -0.19
DEP1	YAL013W	HSH49	Q99181	213 aa	Predicted RBP	13.84	□□□□□ -0.19
DEP1	YAL013W	CDC21	P06785	304 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	SPT23	P35210	1082 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	FRE2	P36033	711 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	FTH1	P38310	465 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	YHR078W	P38799	552 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	UTP9	P38882	575 aa	Known RBP	13.83	□□□□□ -0.2
DEP1	YAL013W	YER034W	P40022	185 aa	Known RBP	13.83	□□□□□ -0.2
DEP1	YAL013W	EMP65	P40085	556 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	FKH2	P41813	862 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	GCD10	P41814	478 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	NAS6	P50086	228 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	YGL108C	P53139	140 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	CLU1	Q03690	1277 aa	Known RBP	13.83	□□□□□ -0.2
DEP1	YAL013W	YMR111C	Q04461	462 aa	Predicted RBP	13.83	□□□□□ -0.2
DEP1	YAL013W	BCH1	Q05029	724 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	MCH5	Q08777	521 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	PST1	Q12355	444 aa		13.83	□□□□□ -0.2
DEP1	YAL013W	TRP3	P00937	484 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	ARD1	P07347	238 aa	Predicted RBP	13.82	□□□□□ -0.2
DEP1	YAL013W	PHO91	P27514	894 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	YKL100C	P34248	587 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	ALG5	P40350	334 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	NNF1	P47149	201 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	IMA1	P53051	589 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	ATG10	Q07879	167 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	GPN2	Q08726	347 aa	Predicted RBP	13.82	□□□□□ -0.2
DEP1	YAL013W	Q0182	Q9ZZW1	134 aa		13.82	□□□□□ -0.2
DEP1	YAL013W	SUC2	P00724	532 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	FUM1	P08417	488 aa	Known RBP	13.81	□□□□□ -0.2
DEP1	YAL013W	COS2	P0CX12	379 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	COS3	P0CX13	379 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	VPS34	P22543	875 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	YCK2	P23292	546 aa	Known RBP	13.81	□□□□□ -0.2
DEP1	YAL013W	PHO87	P25360	923 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	RSC6	P25632	483 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	CRM1	P30822	1084 aa	Known RBP	13.81	□□□□□ -0.2
DEP1	YAL013W	YKL151C	P36059	337 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	SOL2	P37262	315 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	TRM5	P38793	499 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	COS4	P43542	379 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	HST3	P53687	447 aa		13.81	□□□□□ -0.2
DEP1	YAL013W	SAM4	Q08985	325 aa	Known RBP	13.81	□□□□□ -0.2
DEP1	YAL013W	YMR084W	A2P2R3	262 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	INH1	P01097	85 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	YKR104W	P0CE69	306 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	RSR1	P13856	272 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	CHL1	P22516	861 aa	Predicted RBP	13.8	□□□□□ -0.2
DEP1	YAL013W	SPS22	P25380	463 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	CSE1	P33307	960 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	UBA4	P38820	440 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	CCT6	P39079	546 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	ECM1	P39715	212 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	UTP18	P40362	594 aa	Predicted RBP	13.8	□□□□□ -0.2
DEP1	YAL013W	YFR018C	P43599	363 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	NBP35	P52920	328 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	COG2	P53271	262 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	ZRG17	P53735	605 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	HPF1	Q05164	967 aa		13.8	□□□□□ -0.2
DEP1	YAL013W	STE14	P32584	239 aa		13.79	□□□□□ -0.2

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