RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 NBPF11Q86T75 865 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 HSCBQ8IWL3 235 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 CCDC144CPQ8IYA2 1237 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 AGBL1Q96MI9 1066 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 MCOLN1Q9GZU1 580 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 VAT1LQ9HCJ6 419 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 GJD2Q9UKL4 321 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 CCNA1P78396 465 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 PRKCZQ05513 592 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 ASPRV1Q53RT3 343 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 GPR142Q7Z601 462 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 NCAPG2Q86XI2 1143 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 ADGRF4Q8IZF3 695 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 SRRDQ9UH36 339 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 PTPN22Q9Y2R2 807 aa17.45■□□□□ 0.38
TRIM28-207ENST00000597136 RBBP6Q7Z6E9 1792 aaKnown RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 KLF18A0A0U1RQI7 1052 aa17.44■□□□□ 0.38
TRIM28-207ENST00000597136 K7ELQ4 463 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 MAPK4P31152 587 aa17.44■□□□□ 0.38
TRIM28-207ENST00000597136 BECN1Q14457 450 aa17.44■□□□□ 0.38
TRIM28-207ENST00000597136 SNRNP48Q6IEG0 339 aaKnown RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 PLEKHH3Q7Z736 793 aa17.44■□□□□ 0.38
TRIM28-207ENST00000597136 RIOX2Q8IUF8 465 aa17.44■□□□□ 0.38
TRIM28-207ENST00000597136 CCAR1Q8IX12 1150 aaKnown RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 COA7Q96BR5 231 aa17.44■□□□□ 0.38
TRIM28-207ENST00000597136 ZNF274Q96GC6 653 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 ZSCAN31Q96LW9 406 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 RANBP17Q9H2T7 1088 aaKnown RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 CTDP1Q9Y5B0 961 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-207ENST00000597136 SLC12A7Q9Y666 1083 aa17.44■□□□□ 0.38
TRIM28-207ENST00000597136 ATP2A1O14983 1001 aa17.43■□□□□ 0.38
TRIM28-207ENST00000597136 FLT3LGP49771 235 aa17.43■□□□□ 0.38
TRIM28-207ENST00000597136 ME3Q16798 604 aa17.43■□□□□ 0.38
TRIM28-207ENST00000597136 APOA5Q6Q788 366 aa17.43■□□□□ 0.38
TRIM28-207ENST00000597136 CMTR1Q8N1G2 835 aaKnown RBP17.43■□□□□ 0.38
TRIM28-207ENST00000597136 TMX3Q96JJ7 454 aa17.43■□□□□ 0.38
TRIM28-207ENST00000597136 JMJD4Q9H9V9 463 aa17.43■□□□□ 0.38
TRIM28-207ENST00000597136 PTCH2Q9Y6C5 1203 aa17.43■□□□□ 0.38
TRIM28-207ENST00000597136 ZNF236Q9UL36 1845 aa17.42■□□□□ 0.38
TRIM28-207ENST00000597136 BRCA2P51587 3418 aa17.42■□□□□ 0.38
TRIM28-207ENST00000597136 CYTH3O43739 400 aa17.42■□□□□ 0.38
TRIM28-207ENST00000597136 LARGE1O95461 756 aa17.42■□□□□ 0.38
TRIM28-207ENST00000597136 PDIA3P30101 505 aaKnown RBP17.42■□□□□ 0.38
TRIM28-207ENST00000597136 ARHGEF6Q15052 776 aa17.42■□□□□ 0.38
TRIM28-207ENST00000597136 SHCBP1Q8NEM2 672 aa17.42■□□□□ 0.38
TRIM28-207ENST00000597136 TEX13BQ9BXU2 312 aa17.42■□□□□ 0.38
TRIM28-207ENST00000597136 SH2B1Q9NRF2 756 aaPredicted RBP17.42■□□□□ 0.38
TRIM28-207ENST00000597136 DDAH1O94760 285 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 PLEKHA8P1O95397 391 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 GNRH1P01148 92 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 FDX1P10109 184 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 PTPREP23469 700 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 HOXD10P28358 340 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 MORN1Q5T089 497 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 FBXO46Q6PJ61 603 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-207ENST00000597136 MICU3Q86XE3 530 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 FANCBQ8NB91 859 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 HOMER2Q9NSB8 354 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 NAP1L2Q9ULW6 460 aaPredicted RBP17.41■□□□□ 0.38
TRIM28-207ENST00000597136 HPS5Q9UPZ3 1129 aa17.41■□□□□ 0.38
TRIM28-207ENST00000597136 GOLGA8BA8MQT2 603 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 DHX16O60231 1041 aaKnown RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 PFKFB2O60825 505 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 SLC25A27O95847 323 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 OAZ1P54368 228 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 STK3Q13188 491 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 SYNE3Q6ZMZ3 975 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 SRBD1Q8N5C6 995 aaKnown RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 USP6NLQ92738 828 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 MAP3K14Q99558 947 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 MROH8Q9H579 483 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 RIOX1Q9H6W3 641 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 CWC22Q9HCG8 908 aaKnown RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 FAM217BQ9NTX9 383 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 ZBTB43O43298 467 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 ICAM1P05362 532 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 ALAS1P13196 640 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 CYP2B6P20813 491 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 PKN2Q16513 984 aaKnown RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 CDC37Q16543 378 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 QRICH1Q2TAL8 776 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 MUM1L1Q5H9M0 696 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 CCDC82Q8N4S0 544 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 CTCFLQ8NI51 663 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 PIBF1Q8WXW3 757 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 SLKQ9H2G2 1235 aaPredicted RBP17.4■□□□□ 0.38
TRIM28-207ENST00000597136 CCPG1Q9ULG6 757 aa17.4■□□□□ 0.38
TRIM28-207ENST00000597136 COBLO75128 1261 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 ELNP15502 786 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 CDC27P30260 824 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 RCAN1P53805 252 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 NECAB1Q8N987 351 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 RAET1EQ8TD07 263 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 MTMR8Q96EF0 704 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 TRERF1Q96PN7 1200 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 PIGSQ96S52 555 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 NUDT12Q9BQG2 462 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 IVNS1ABPQ9Y6Y0 642 aa17.39■□□□□ 0.37
TRIM28-207ENST00000597136 KIAA1217Q5T5P2 1943 aa17.38■□□□□ 0.37
TRIM28-207ENST00000597136 SLC15A5A6NIM6 579 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms