RNA–Protein interactions for RNA: ENST00000588745.5

SMAD4-205, Transcript of SMAD family member 4, humanhuman

TSL 5 BASIC

Gene SMAD4, Length 1,371 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-205ENST00000588745 CCAR1Q8IX12 1150 aaKnown RBP13.06□□□□□ -0.32
SMAD4-205ENST00000588745 REXO1Q8N1G1 1221 aaKnown RBP13.06□□□□□ -0.32
SMAD4-205ENST00000588745 ZC3H15Q8WU90 426 aaKnown RBP13.06□□□□□ -0.32
SMAD4-205ENST00000588745 MRPS27Q92552 414 aaKnown RBP13.06□□□□□ -0.32
SMAD4-205ENST00000588745 KIAA1683Q9H0B3 1180 aa13.06□□□□□ -0.32
SMAD4-205ENST00000588745 AS3MTQ9HBK9 375 aa13.06□□□□□ -0.32
SMAD4-205ENST00000588745 PICK1Q9NRD5 415 aa13.06□□□□□ -0.32
SMAD4-205ENST00000588745 DDX19AQ9NUU7 478 aaKnown RBP13.06□□□□□ -0.32
SMAD4-205ENST00000588745 PRR12Q9ULL5 1215 aa13.06□□□□□ -0.32
SMAD4-205ENST00000588745 WDR46O15213 610 aaKnown RBP13.05□□□□□ -0.32
SMAD4-205ENST00000588745 ATP2B1P20020 1258 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 MARCKSP29966 332 aaPredicted RBP13.05□□□□□ -0.32
SMAD4-205ENST00000588745 KRT26Q7Z3Y9 468 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 FAM160B2Q86V87 743 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 FSIP1Q8NA03 581 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.05□□□□□ -0.32
SMAD4-205ENST00000588745 LPAR1Q92633 364 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 ZKSCAN4Q969J2 545 aaPredicted RBP13.05□□□□□ -0.32
SMAD4-205ENST00000588745 WDR18Q9BV38 432 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 AMNQ9BXJ7 453 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 GOLPH3LQ9H4A5 285 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 RIC8AQ9NPQ8 531 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 FEM1BQ9UK73 627 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 FZD1Q9UP38 647 aa13.05□□□□□ -0.32
SMAD4-205ENST00000588745 WNT7AO00755 349 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 CUTAO60888 179 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 PTPRAP18433 802 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 USP14P54578 494 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 FAM160A1Q05DH4 1040 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 KRI1Q8N9T8 703 aaKnown RBP13.04□□□□□ -0.32
SMAD4-205ENST00000588745 CHURC1Q8WUH1 139 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 CUL5Q93034 780 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 TAF1DQ9H5J8 278 aaPredicted RBP13.04□□□□□ -0.32
SMAD4-205ENST00000588745 DACT1Q9NYF0 836 aa13.04□□□□□ -0.32
SMAD4-205ENST00000588745 SYCE3A1L190 88 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 NR1I2O75469 434 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 USP2O75604 605 aaPredicted RBP13.03□□□□□ -0.32
SMAD4-205ENST00000588745 PTPREP23469 700 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 MTMR2Q13614 643 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 NONOQ15233 471 aaKnown RBP eCLIP13.03□□□□□ -0.32
SMAD4-205ENST00000588745 INF2Q27J81 1249 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 FBXO11Q86XK2 927 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 GLT8D2Q9H1C3 349 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 NUP62CLQ9H1M0 184 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 RANBP17Q9H2T7 1088 aaKnown RBP13.03□□□□□ -0.32
SMAD4-205ENST00000588745 FBXO2Q9UK22 296 aaPredicted RBP13.03□□□□□ -0.32
SMAD4-205ENST00000588745 PCDHA1Q9Y5I3 950 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 SRCAPQ6ZRS2 3230 aa13.03□□□□□ -0.32
SMAD4-205ENST00000588745 PARP14Q460N5 1801 aa13.02□□□□□ -0.32
SMAD4-205ENST00000588745 POTECB2RU33 542 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 LETM1O95202 739 aaPredicted RBP13.02□□□□□ -0.33
SMAD4-205ENST00000588745 VCAM1P19320 739 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 CMA1P23946 247 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 CLK2P49760 499 aaKnown RBP13.02□□□□□ -0.33
SMAD4-205ENST00000588745 MRPL12P52815 198 aaKnown RBP13.02□□□□□ -0.33
SMAD4-205ENST00000588745 BACE1P56817 501 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 SNAP25P60880 206 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 ATP2C1P98194 919 aaPredicted RBP13.02□□□□□ -0.33
SMAD4-205ENST00000588745 TRAF1Q13077 416 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 SPP2Q13103 211 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 PRKG1Q13976 671 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 ZNF174Q15697 407 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 JAKMIP3Q5VZ66 844 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 SHC4Q6S5L8 630 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 DLK2Q6UY11 383 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 PNMA8AQ86V59 439 aaPredicted RBP13.02□□□□□ -0.33
SMAD4-205ENST00000588745 ZNF280CQ8ND82 737 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 ENGASEQ8NFI3 743 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 CDCA5Q96FF9 252 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 CLSTN2Q9H4D0 955 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 TMEM260Q9NX78 707 aa13.02□□□□□ -0.33
SMAD4-205ENST00000588745 BIN2Q9UBW5 565 aaPredicted RBP13.02□□□□□ -0.33
SMAD4-205ENST00000588745 SRPRBQ9Y5M8 271 aaKnown RBP13.02□□□□□ -0.33
SMAD4-205ENST00000588745 FAM237AA0A1B0GTK4 181 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 A0A1B0GVL5 298 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 SOCS7O14512 581 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 PPP1R12BO60237 982 aaPredicted RBP13.01□□□□□ -0.33
SMAD4-205ENST00000588745 PFKFB1P16118 471 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 NF2P35240 595 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 MAP3K9P80192 1104 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 ORC2Q13416 577 aaPredicted RBP13.01□□□□□ -0.33
SMAD4-205ENST00000588745 SNW1Q13573 536 aaKnown RBP13.01□□□□□ -0.33
SMAD4-205ENST00000588745 DGKZQ13574 1117 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 USH1GQ495M9 461 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 EAPPQ56P03 285 aaPredicted RBP13.01□□□□□ -0.33
SMAD4-205ENST00000588745 RESP18Q5W5W9 173 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 LRSAM1Q6UWE0 723 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 NEK8Q86SG6 692 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 FMR1NBQ8N0W7 255 aaPredicted RBP13.01□□□□□ -0.33
SMAD4-205ENST00000588745 FERMT2Q96AC1 680 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 KIFC2Q96AC6 838 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 C12orf42Q96LP6 360 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 CLIC6Q96NY7 704 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 SLF1Q9BQI6 1058 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 PSTPIP2Q9H939 334 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 EMILIN3Q9NT22 766 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 FBXO28Q9NVF7 368 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 MRVI1Q9Y6F6 885 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 SNCAIPQ9Y6H5 919 aa13.01□□□□□ -0.33
SMAD4-205ENST00000588745 FSD2A1L4K1 749 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms