RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ST14Q9Y5Y6 855 aa6.8□□□□□ -1.32
LINC00560-201ENST00000564593 H0Y8X5 98 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 CAPNS1P04632 268 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 GSNP06396 782 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 CEACAM5P06731 702 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 FGFR1P11362 822 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 SRFP11831 508 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 PABPC1P11940 636 aaKnown RBP6.79□□□□□ -1.32
LINC00560-201ENST00000564593 CTSKP43235 329 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 GP2P55259 537 aaKnown RBP6.79□□□□□ -1.32
LINC00560-201ENST00000564593 AMPD2Q01433 879 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 DPY19L1Q2PZI1 675 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 NSMFQ6X4W1 530 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 KIAA0907Q7Z7F0 614 aaPredicted RBP6.79□□□□□ -1.32
LINC00560-201ENST00000564593 SPACA3Q8IXA5 215 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 SYNPOQ8N3V7 929 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 ZNF655Q8N720 491 aaPredicted RBP6.79□□□□□ -1.32
LINC00560-201ENST00000564593 EXOC2Q96KP1 924 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 HSPA12BQ96MM6 686 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 FEZ1Q99689 392 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 IER2Q9BTL4 223 aa6.79□□□□□ -1.32
LINC00560-201ENST00000564593 GPR55Q9Y2T6 319 aaPredicted RBP6.79□□□□□ -1.32
LINC00560-201ENST00000564593 H3BS24 57 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 PPP1R12AO14974 1030 aaPredicted RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 POU4F1Q01851 419 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 TKFCQ3LXA3 575 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 CRTC3Q6UUV7 619 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 ZDHHC13Q8IUH4 622 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 TCTN2Q96GX1 697 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 KRTAP4-9Q9BYQ8 210 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 NKX2-4Q9H2Z4 354 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 PIM2Q9P1W9 311 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 ZSWIM5Q9P217 1185 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 PLAGL2Q9UPG8 496 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 MRPS23Q9Y3D9 190 aaKnown RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 MED26O95402 600 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 NCLP19338 710 aaKnown RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 TPP2P29144 1249 aaPredicted RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 HOXC12P31275 282 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 KCNJ6P48051 423 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 CLCN7P51798 805 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 SF1Q15637 639 aaKnown RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 TAF7LQ5H9L4 462 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 TSPYL5Q86VY4 417 aaPredicted RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 PLD6Q8N2A8 252 aaKnown RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 NETO1Q8TDF5 533 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 KISS1RQ969F8 398 aaPredicted RBP6.78□□□□□ -1.32
LINC00560-201ENST00000564593 UBE2FQ969M7 185 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 OSBP2Q969R2 916 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 CYP26B1Q9NR63 512 aa6.78□□□□□ -1.32
LINC00560-201ENST00000564593 WASH4PA8MWX3 477 aa6.77□□□□□ -1.33
LINC00560-201ENST00000564593 CD3EP07766 207 aa6.77□□□□□ -1.33
LINC00560-201ENST00000564593 SNRPB2P08579 225 aaKnown RBP6.77□□□□□ -1.33
LINC00560-201ENST00000564593 NOP2P46087 812 aaKnown RBP6.77□□□□□ -1.33
LINC00560-201ENST00000564593 GYS2P54840 703 aa6.77□□□□□ -1.33
LINC00560-201ENST00000564593 IFI16Q16666 785 aaKnown RBP6.77□□□□□ -1.33
LINC00560-201ENST00000564593 KCTD13Q8WZ19 329 aa6.77□□□□□ -1.33
LINC00560-201ENST00000564593 CCDC140Q96MF4 163 aa6.77□□□□□ -1.33
LINC00560-201ENST00000564593 ZC3H7BQ9UGR2 993 aaKnown RBP6.77□□□□□ -1.33
LINC00560-201ENST00000564593 CD2APQ9Y5K6 639 aa6.77□□□□□ -1.33
LINC00560-201ENST00000564593 TMEM265A0A087WTH1 108 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 PRR19A6NJB7 356 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 DLX3O60479 287 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 FOSL1P15407 271 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 ECI1P42126 302 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 GFRA1P56159 465 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 SUMO1P63165 101 aaKnown RBP6.76□□□□□ -1.33
LINC00560-201ENST00000564593 C21orf62-AS1Q17RA5 79 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 THAP5Q7Z6K1 395 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 SNX11Q9Y5W9 270 aa6.76□□□□□ -1.33
LINC00560-201ENST00000564593 SSU72P8A0A1W2PR75 194 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 STXBP3O00186 592 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 CPP00450 1065 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 VAV1P15498 845 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 BMP8BP34820 402 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 PCBP3P57721 371 aaKnown RBP6.75□□□□□ -1.33
LINC00560-201ENST00000564593 SCRN1Q12765 414 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 CBX2Q14781 532 aaPredicted RBP6.75□□□□□ -1.33
LINC00560-201ENST00000564593 RNF187Q5TA31 235 aaPredicted RBP6.75□□□□□ -1.33
LINC00560-201ENST00000564593 USHBP1Q8N6Y0 703 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 FCRL3Q96P31 734 aaPredicted RBP6.75□□□□□ -1.33
LINC00560-201ENST00000564593 MCMBPQ9BTE3 642 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 NCOA5Q9HCD5 579 aaKnown RBP6.75□□□□□ -1.33
LINC00560-201ENST00000564593 SEMA3GQ9NS98 782 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 DUSP13Q9UII6 198 aa6.75□□□□□ -1.33
LINC00560-201ENST00000564593 DNAJC25-GNG10A0A024R161 153 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 RAPGEF3O95398 923 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 SYPP08247 313 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 MAP4K2Q12851 820 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 PRSS53Q2L4Q9 553 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 TMEM145Q8NBT3 493 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 SLC12A9Q9BXP2 914 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 TCFL5Q9UL49 500 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 C2orf71A6NGG8 1288 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 PLD2O14939 933 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 AURKAO14965 403 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 SCG5P05408 212 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 IFNGR1P15260 489 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 LTKP29376 864 aa6.74□□□□□ -1.33
LINC00560-201ENST00000564593 HOXA10P31260 410 aaPredicted RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 146.3 ms