RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF460Q14592 562 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 FAM214BQ7L5A3 538 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 DDX1Q92499 740 aaKnown RBP10.21□□□□□ -0.77
NUP54-215ENST00000514313 PTPRN2Q92932 1015 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 SCLYQ96I15 445 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 CCDC140Q96MF4 163 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 MCMBPQ9BTE3 642 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 MCM8Q9UJA3 840 aa10.21□□□□□ -0.77
NUP54-215ENST00000514313 PRR33A8MZF0 331 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 ITIH2P19823 946 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 CTSKP43235 329 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 KIR3DL1P43629 444 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 SCRN1Q12765 414 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 CRTC3Q6UUV7 619 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 USP53Q70EK8 1073 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 PPM1KQ8N3J5 372 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 GIMAP7Q8NHV1 300 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 G3BP2Q9UN86 482 aaKnown RBP10.2□□□□□ -0.78
NUP54-215ENST00000514313 TRAF6Q9Y4K3 522 aa10.2□□□□□ -0.78
NUP54-215ENST00000514313 ASXL2Q76L83 1435 aa10.19□□□□□ -0.78
NUP54-215ENST00000514313 STXBP3O00186 592 aa10.19□□□□□ -0.78
NUP54-215ENST00000514313 CPP00450 1065 aa10.19□□□□□ -0.78
NUP54-215ENST00000514313 DENND5AQ6IQ26 1287 aa10.19□□□□□ -0.78
NUP54-215ENST00000514313 MAMDC2Q7Z304 686 aaPredicted RBP10.19□□□□□ -0.78
NUP54-215ENST00000514313 STRA8Q7Z7C7 330 aa10.19□□□□□ -0.78
NUP54-215ENST00000514313 GATA6Q92908 595 aa10.19□□□□□ -0.78
NUP54-215ENST00000514313 HDAC8Q9BY41 377 aa10.19□□□□□ -0.78
NUP54-215ENST00000514313 DHX15O43143 795 aaKnown RBP10.18□□□□□ -0.78
NUP54-215ENST00000514313 OPA1O60313 960 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 RASGRP1O95267 797 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 ASLP04424 464 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 CD3EP07766 207 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 TNK2Q07912 1038 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 FAM50AQ14320 339 aaKnown RBP10.18□□□□□ -0.78
NUP54-215ENST00000514313 PKN3Q6P5Z2 889 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 C22orf34Q6ZV56 151 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 KREMEN2Q8NCW0 462 aa10.18□□□□□ -0.78
NUP54-215ENST00000514313 LEO1Q8WVC0 666 aaPredicted RBP10.18□□□□□ -0.78
NUP54-215ENST00000514313 SCARF2Q96GP6 870 aaPredicted RBP10.18□□□□□ -0.78
NUP54-215ENST00000514313 HEXIM2Q96MH2 286 aaKnown RBP10.18□□□□□ -0.78
NUP54-215ENST00000514313 ASCC2Q9H1I8 757 aaPredicted RBP10.18□□□□□ -0.78
NUP54-215ENST00000514313 GSNP06396 782 aa10.17□□□□□ -0.78
NUP54-215ENST00000514313 ZNF865P0CJ78 1059 aaPredicted RBP10.17□□□□□ -0.78
NUP54-215ENST00000514313 POU3F2P20265 443 aaPredicted RBP10.17□□□□□ -0.78
NUP54-215ENST00000514313 ADMP35318 185 aa10.17□□□□□ -0.78
NUP54-215ENST00000514313 IGFALSP35858 605 aa10.17□□□□□ -0.78
NUP54-215ENST00000514313 POU4F1Q01851 419 aa10.17□□□□□ -0.78
NUP54-215ENST00000514313 PCBP1Q15365 356 aaKnown RBP eCLIP10.17□□□□□ -0.78
NUP54-215ENST00000514313 BRDTQ58F21 947 aaPredicted RBP10.17□□□□□ -0.78
NUP54-215ENST00000514313 ODR4Q5SWX8 454 aa10.17□□□□□ -0.78
NUP54-215ENST00000514313 NOL8Q76FK4 1167 aaKnown RBP10.17□□□□□ -0.78
NUP54-215ENST00000514313 GTF2IRD1Q9UHL9 959 aa10.17□□□□□ -0.78
NUP54-215ENST00000514313 CAPN6Q9Y6Q1 641 aa10.17□□□□□ -0.78
NUP54-215ENST00000514313 KPNA6O60684 536 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 THBDP07204 575 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 CWF19L1Q69YN2 538 aaKnown RBP10.16□□□□□ -0.78
NUP54-215ENST00000514313 STYK1Q6J9G0 422 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 KCNT2Q6UVM3 1135 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 CLEC10AQ8IUN9 316 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 AHI1Q8N157 1196 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 MFSD4AQ8N468 514 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 ATL2Q8NHH9 583 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 COPS5Q92905 334 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 TBC1D32Q96NH3 1257 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 FAM83CQ9BQN1 747 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 SSBP4Q9BWG4 385 aaPredicted RBP10.16□□□□□ -0.78
NUP54-215ENST00000514313 ST14Q9Y5Y6 855 aa10.16□□□□□ -0.78
NUP54-215ENST00000514313 TCRBV16S1A1N1A0A5B0 115 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 EYA4O95677 639 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 CRTAMO95727 393 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 JMJD7P0C870 316 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 NEK4P51957 841 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 EXOSC10Q01780 885 aaKnown RBP10.15□□□□□ -0.78
NUP54-215ENST00000514313 SEPT7Q16181 437 aaKnown RBP10.15□□□□□ -0.78
NUP54-215ENST00000514313 WWC2Q6AWC2 1192 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 OGFOD3Q6PK18 319 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 DDX46Q7L014 1031 aaKnown RBP10.15□□□□□ -0.78
NUP54-215ENST00000514313 ZAR1Q86SH2 424 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 PPIL6Q8IXY8 311 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 NPLOC4Q8TAT6 608 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 FRS2Q8WU20 508 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 DCAF4Q8WV16 495 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 JDP2Q8WYK2 163 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 CEP89Q96ST8 783 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 MTFR1LQ9H019 292 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 BACE2Q9Y5Z0 518 aa10.15□□□□□ -0.78
NUP54-215ENST00000514313 ALG1L2C9J202 215 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 IGF2BP3O00425 579 aaKnown RBP eCLIP10.14□□□□□ -0.79
NUP54-215ENST00000514313 AURKAO14965 403 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 IFNGR1P15260 489 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 PMLP29590 882 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 STRN3Q13033 797 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 CLEC16AQ2KHT3 1053 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 SHISA5Q8N114 240 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 DAGLBQ8NCG7 672 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 PIWIL2Q8TC59 973 aaKnown RBP10.14□□□□□ -0.79
NUP54-215ENST00000514313 MAGEB10Q96LZ2 347 aaPredicted RBP10.14□□□□□ -0.79
NUP54-215ENST00000514313 GPRC5CQ9NQ84 441 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 CHPF2Q9P2E5 772 aa10.14□□□□□ -0.79
NUP54-215ENST00000514313 PCDHA9Q9Y5H5 950 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms