RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 GPKOWQ92917 476 aaPredicted RBP eCLIP9.64□□□□□ -0.87
SF3A1-210ENST00000498259 KLRG1Q96E93 195 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 RAB34Q9BZG1 259 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 MAF1Q9H063 256 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 NUP62CLQ9H1M0 184 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 TNMDQ9H2S6 317 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 PCDHA7Q9UN72 937 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 MRPL11Q9Y3B7 192 aaKnown RBP9.64□□□□□ -0.87
SF3A1-210ENST00000498259 RABGAP1Q9Y3P9 1069 aa9.64□□□□□ -0.87
SF3A1-210ENST00000498259 GREB1LQ9C091 1923 aaPredicted RBP9.63□□□□□ -0.87
SF3A1-210ENST00000498259 A0A1W2PRG0 241 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 GADD45BO75293 160 aaPredicted RBP9.63□□□□□ -0.87
SF3A1-210ENST00000498259 GCFC2P16383 781 aaKnown RBP9.63□□□□□ -0.87
SF3A1-210ENST00000498259 SLC16A2P36021 539 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 HIRAP54198 1017 aaPredicted RBP9.63□□□□□ -0.87
SF3A1-210ENST00000498259 BACE1P56817 501 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 MAP3K9P80192 1104 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 MAP3K11Q16584 847 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 QRICH1Q2TAL8 776 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 ARMC9Q7Z3E5 817 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 NEK8Q86SG6 692 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 MCF2L2Q86YR7 1114 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 CLEC10AQ8IUN9 316 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 TIGD1Q96MW7 591 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 MAP3K20Q9NYL2 800 aaKnown RBP9.63□□□□□ -0.87
SF3A1-210ENST00000498259 USP25Q9UHP3 1055 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 PRR12Q9ULL5 1215 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 PCDHA6Q9UN73 950 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 PCDHA8Q9Y5H6 950 aa9.63□□□□□ -0.87
SF3A1-210ENST00000498259 SRPRBQ9Y5M8 271 aaKnown RBP9.63□□□□□ -0.87
SF3A1-210ENST00000498259 ABCB11O95342 1321 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 SBF1O95248 1867 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 SPDYE3A6NKU9 549 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 UBE2Q2LH0YL09 131 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 ZBED4O75132 1171 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 CCDC192P0DO97 292 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 PTPRAP18433 802 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 ATP2B1P20020 1258 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 PTPREP23469 700 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 PRPHP41219 470 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 ECE1P42892 770 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 MRE11P49959 708 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 USP11P51784 963 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 FAM83BQ5T0W9 1011 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 TTBK2Q6IQ55 1244 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 SASS6Q6UVJ0 657 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 DTHD1Q6ZMT9 781 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 ANKRD13AQ8IZ07 590 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 SPICE1Q8N0Z3 855 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 FSIP1Q8NA03 581 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 ACER1Q8TDN7 264 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 OXER1Q8TDS5 423 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 TNFRSF25Q93038 417 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 SLF1Q9BQI6 1058 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 SDF4Q9BRK5 362 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 DACT1Q9NYF0 836 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 STK24Q9Y6E0 443 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 ZHX2Q9Y6X8 837 aa9.62□□□□□ -0.87
SF3A1-210ENST00000498259 MYH6P13533 1939 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 MYH4Q9Y623 1939 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 M0R2N6 131 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 PIK3CDO00329 1044 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 SOCS7O14512 581 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 MARCH6O60337 910 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 VEGFAP15692 232 aaPredicted RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 LONP1P36776 959 aaKnown RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 SYKP43405 635 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 TOB1P50616 345 aaPredicted RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 OAZ1P54368 228 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 CACNB1Q02641 598 aaPredicted RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 SPP2Q13103 211 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 PABPC4Q13310 644 aaKnown RBP eCLIP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 TTLL12Q14166 644 aaPredicted RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 RRP1BQ14684 758 aaKnown RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 PTPAQ15257 358 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 NPY5RQ15761 445 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 TMEM266Q2M3C6 531 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 EAPPQ56P03 285 aaPredicted RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 LRSAM1Q6UWE0 723 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 ELOA2Q8IYF1 753 aaPredicted RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 KIFC2Q96AC6 838 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 COA7Q96BR5 231 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 CHAMP1Q96JM3 812 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 PGBD1Q96JS3 809 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 C12orf42Q96LP6 360 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 AK8Q96MA6 479 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 TANGO6Q9C0B7 1094 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 RANBP17Q9H2T7 1088 aaKnown RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 TAF1DQ9H5J8 278 aaPredicted RBP9.61□□□□□ -0.87
SF3A1-210ENST00000498259 HOXC10Q9NYD6 342 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 CLEC11AQ9Y240 323 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 PCDHB6Q9Y5E3 794 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 SIPA1L1O43166 1804 aa9.61□□□□□ -0.87
SF3A1-210ENST00000498259 ASTN2O75129 1339 aaPredicted RBP9.6□□□□□ -0.87
SF3A1-210ENST00000498259 MYPNQ86TC9 1320 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 SYCE3A1L190 88 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 NEMFO60524 1076 aa9.6□□□□□ -0.87
SF3A1-210ENST00000498259 CCNT1O60563 726 aaKnown RBP9.6□□□□□ -0.87
SF3A1-210ENST00000498259 FLOT1O75955 427 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms