RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 LRWD1Q9UFC0 647 aa15.06■□□□□ 0
GPC1-209ENST00000495100 EPN1Q9Y6I3 576 aaPredicted RBP15.06■□□□□ 0
GPC1-209ENST00000495100 FANCGO15287 622 aa15.06■□□□□ 0
GPC1-209ENST00000495100 GYPCP04921 128 aa15.06■□□□□ 0
GPC1-209ENST00000495100 NOA1Q8NC60 698 aaKnown RBP15.06■□□□□ 0
GPC1-209ENST00000495100 RRP36Q96EU6 259 aaKnown RBP15.06■□□□□ 0
GPC1-209ENST00000495100 RUFY1Q96T51 708 aa15.06■□□□□ 0
GPC1-209ENST00000495100 XDHP47989 1333 aa15.06■□□□□ 0
GPC1-209ENST00000495100 RFX7Q2KHR2 1363 aa15.06■□□□□ 0
GPC1-209ENST00000495100 PRPF3O43395 683 aaKnown RBP15.06■□□□□ 0
GPC1-209ENST00000495100 PLEKP08567 350 aaPredicted RBP15.06■□□□□ 0
GPC1-209ENST00000495100 CALML3P27482 149 aa15.06■□□□□ 0
GPC1-209ENST00000495100 TMEM47Q9BQJ4 181 aa15.06■□□□□ 0
GPC1-209ENST00000495100 RIOK1Q9BRS2 568 aaKnown RBP15.06■□□□□ 0
GPC1-209ENST00000495100 TUBGCP2Q9BSJ2 902 aa15.06■□□□□ 0
GPC1-209ENST00000495100 BCCIPQ9P287 314 aaKnown RBP eCLIP15.06■□□□□ 0
GPC1-209ENST00000495100 TOPAZ1Q8N9V7 1692 aa15.06■□□□□ 0
GPC1-209ENST00000495100 MFAP3LO75121 409 aa15.05■□□□□ 0
GPC1-209ENST00000495100 APBA1Q02410 837 aa15.05■□□□□ 0
GPC1-209ENST00000495100 PRPF4BQ13523 1007 aaKnown RBP15.05■□□□□ 0
GPC1-209ENST00000495100 DCAF17Q5H9S7 520 aaPredicted RBP15.05■□□□□ 0
GPC1-209ENST00000495100 RDH13Q8NBN7 331 aa15.05■□□□□ 0
GPC1-209ENST00000495100 ARHGEF1Q92888 912 aaKnown RBP15.05■□□□□ 0
GPC1-209ENST00000495100 ZBTB21Q9ULJ3 1066 aa15.05■□□□□ 0
GPC1-209ENST00000495100 TADA3O75528 432 aa15.05■□□□□ -0
GPC1-209ENST00000495100 KSR1Q8IVT5 923 aa15.05■□□□□ -0
GPC1-209ENST00000495100 JAKMIP2Q96AA8 810 aa15.05■□□□□ -0
GPC1-209ENST00000495100 MED1Q15648 1581 aaPredicted RBP15.05■□□□□ -0
GPC1-209ENST00000495100 EFCAB8A8MWE9 144 aa15.05■□□□□ -0
GPC1-209ENST00000495100 CYP26C1Q6V0L0 522 aa15.05■□□□□ -0
GPC1-209ENST00000495100 ADAT2Q7Z6V5 191 aaKnown RBP15.05■□□□□ -0
GPC1-209ENST00000495100 BSDC1Q9NW68 430 aaPredicted RBP15.05■□□□□ -0
GPC1-209ENST00000495100 FAN1Q9Y2M0 1017 aa15.05■□□□□ -0
GPC1-209ENST00000495100 TDP2O95551 362 aa15.04■□□□□ -0
GPC1-209ENST00000495100 C2orf54Q08AI8 447 aa15.04■□□□□ -0
GPC1-209ENST00000495100 STK4Q13043 487 aa15.04■□□□□ -0
GPC1-209ENST00000495100 RAPGEF1Q13905 1077 aa15.04■□□□□ -0
GPC1-209ENST00000495100 TTBK2Q6IQ55 1244 aa15.04■□□□□ -0
GPC1-209ENST00000495100 POTEDQ86YR6 584 aa15.04■□□□□ -0
GPC1-209ENST00000495100 PHF20Q9BVI0 1012 aa15.04■□□□□ -0
GPC1-209ENST00000495100 C6orf50Q9HD87 102 aa15.04■□□□□ -0
GPC1-209ENST00000495100 COL5A2P05997 1499 aaPredicted RBP15.04■□□□□ -0
GPC1-209ENST00000495100 NCK2O43639 380 aa15.04■□□□□ -0
GPC1-209ENST00000495100 USP8P40818 1118 aa15.04■□□□□ -0
GPC1-209ENST00000495100 KIF5AQ12840 1032 aa15.04■□□□□ -0
GPC1-209ENST00000495100 SEC23AQ15436 765 aa15.04■□□□□ -0
GPC1-209ENST00000495100 CEP95Q96GE4 821 aa15.04■□□□□ -0
GPC1-209ENST00000495100 CNOT6LQ96LI5 555 aaKnown RBP15.04■□□□□ -0
GPC1-209ENST00000495100 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.04■□□□□ -0
GPC1-209ENST00000495100 GOLGA6L9A6NEM1 432 aa15.04■□□□□ -0
GPC1-209ENST00000495100 SFI1A8K8P3 1242 aa15.04■□□□□ -0
GPC1-209ENST00000495100 SASH3O75995 380 aa15.04■□□□□ -0
GPC1-209ENST00000495100 HNRNPH2P55795 449 aaKnown RBP15.04■□□□□ -0
GPC1-209ENST00000495100 HLTFQ14527 1009 aaKnown RBP eCLIP15.04■□□□□ -0
GPC1-209ENST00000495100 NONOQ15233 471 aaKnown RBP eCLIP15.04■□□□□ -0
GPC1-209ENST00000495100 TCP11X2Q5H9J9 407 aa15.04■□□□□ -0
GPC1-209ENST00000495100 REXO1Q8N1G1 1221 aaKnown RBP15.04■□□□□ -0
GPC1-209ENST00000495100 OR8K1Q8NGG5 319 aa15.04■□□□□ -0
GPC1-209ENST00000495100 GSDMAQ96QA5 445 aa15.04■□□□□ -0
GPC1-209ENST00000495100 PACSIN2Q9UNF0 486 aaPredicted RBP15.04■□□□□ -0
GPC1-209ENST00000495100 USP17L15C9J2P7 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L13C9JLJ4 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L11C9JVI0 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L18D6R9N7 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L22D6RA61 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L17D6RBQ6 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L19D6RCP7 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L20D6RJB6 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L24Q0WX57 530 aa15.03■□□□□ -0
GPC1-209ENST00000495100 NR1I3Q14994 352 aa15.03■□□□□ -0
GPC1-209ENST00000495100 USP17L6PQ6QN14 398 aa15.03■□□□□ -0
GPC1-209ENST00000495100 ZNF384Q8TF68 577 aa15.03■□□□□ -0
GPC1-209ENST00000495100 DBNDD1Q9H9R9 158 aa15.03■□□□□ -0
GPC1-209ENST00000495100 RMND1Q9NWS8 449 aa15.03■□□□□ -0
GPC1-209ENST00000495100 PPP1R3GB7ZBB8 358 aa15.03■□□□□ -0
GPC1-209ENST00000495100 GTPBP6O43824 516 aaPredicted RBP15.03■□□□□ -0
GPC1-209ENST00000495100 ERVK-24P63145 666 aa15.03■□□□□ -0
GPC1-209ENST00000495100 CCDC70Q6NSX1 233 aa15.03■□□□□ -0
GPC1-209ENST00000495100 CC2D1AQ6P1N0 951 aaPredicted RBP15.03■□□□□ -0
GPC1-209ENST00000495100 ZNF804AQ7Z570 1209 aa15.03■□□□□ -0
GPC1-209ENST00000495100 MLXIPQ9HAP2 919 aa15.03■□□□□ -0
GPC1-209ENST00000495100 ABHD10Q9NUJ1 306 aa15.03■□□□□ -0
GPC1-209ENST00000495100 DDX39AO00148 427 aaKnown RBP15.03■□□□□ -0
GPC1-209ENST00000495100 PLA2G4AP47712 749 aa15.03■□□□□ -0
GPC1-209ENST00000495100 VSNL1P62760 191 aa15.03■□□□□ -0
GPC1-209ENST00000495100 ALX1Q15699 326 aa15.03■□□□□ -0
GPC1-209ENST00000495100 CALCRLQ16602 461 aa15.03■□□□□ -0
GPC1-209ENST00000495100 HERC4Q5GLZ8 1057 aaPredicted RBP15.03■□□□□ -0
GPC1-209ENST00000495100 KCTD16Q68DU8 428 aa15.03■□□□□ -0
GPC1-209ENST00000495100 PNKPQ96T60 521 aa15.03■□□□□ -0
GPC1-209ENST00000495100 SH2D3AQ9BRG2 576 aa15.03■□□□□ -0
GPC1-209ENST00000495100 TRIM31Q9BZY9 425 aa15.03■□□□□ -0
GPC1-209ENST00000495100 GOLPH3Q9H4A6 298 aa15.03■□□□□ -0
GPC1-209ENST00000495100 ADD3Q9UEY8 706 aaKnown RBP15.03■□□□□ -0
GPC1-209ENST00000495100 TTF2Q9UNY4 1162 aaKnown RBP15.03■□□□□ -0
GPC1-209ENST00000495100 ZEB2O60315 1214 aa15.02■□□□□ -0
GPC1-209ENST00000495100 ATP2C2O75185 946 aa15.02■□□□□ -0
GPC1-209ENST00000495100 IL17AQ16552 155 aa15.02■□□□□ -0
GPC1-209ENST00000495100 TMEM266Q2M3C6 531 aa15.02■□□□□ -0
GPC1-209ENST00000495100 AMIGO3Q86WK7 504 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms