RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 GPR142Q7Z601 462 aa22.97■■□□□ 1.27
LIME1-205ENST00000480139 PLEKHH3Q7Z736 793 aa22.97■■□□□ 1.27
LIME1-205ENST00000480139 MICU3Q86XE3 530 aa22.97■■□□□ 1.27
LIME1-205ENST00000480139 RIOX1Q9H6W3 641 aa22.97■■□□□ 1.27
LIME1-205ENST00000480139 RAVER2Q9HCJ3 691 aaKnown RBP22.97■■□□□ 1.27
LIME1-205ENST00000480139 RBM28Q9NW13 759 aaKnown RBP22.97■■□□□ 1.27
LIME1-205ENST00000480139 SRRDQ9UH36 339 aa22.97■■□□□ 1.27
LIME1-205ENST00000480139 MYH6P13533 1939 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 DOCK3Q8IZD9 2030 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 APOBRQ0VD83 1088 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 TKFCQ3LXA3 575 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.96■■□□□ 1.27
LIME1-205ENST00000480139 CPXCR1Q8N123 301 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 MTMR8Q96EF0 704 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 SPZ1Q9BXG8 430 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 CPVLQ9H3G5 476 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 JMJD4Q9H9V9 463 aa22.96■■□□□ 1.27
LIME1-205ENST00000480139 STRNO43815 780 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 RXRAP19793 462 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 ANKRD1Q15327 319 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 CDC37Q16543 378 aaPredicted RBP22.95■■□□□ 1.26
LIME1-205ENST00000480139 NCAPG2Q86XI2 1143 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 ABRAQ8N0Z2 381 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 CHST13Q8NET6 341 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 IL27Q8NEV9 243 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 SOCS4Q8WXH5 440 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 KIF2CQ99661 725 aa22.95■■□□□ 1.26
LIME1-205ENST00000480139 SLC15A5A6NIM6 579 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 GOLGA8BA8MQT2 603 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 PTPREP23469 700 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 SLC35G1Q2M3R5 365 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 CCDC174Q6PII3 467 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 TMTC3Q6ZXV5 915 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 AGBL1Q96MI9 1066 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 TBC1D32Q96NH3 1257 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 CWC22Q9HCG8 908 aaKnown RBP22.94■■□□□ 1.26
LIME1-205ENST00000480139 FBXO40Q9UH90 709 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 GJD2Q9UKL4 321 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 PTPN22Q9Y2R2 807 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 RIPK3Q9Y572 518 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 IVNS1ABPQ9Y6Y0 642 aa22.94■■□□□ 1.26
LIME1-205ENST00000480139 CCDC196A0A1B0GTZ2 297 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 GOLGA8AA7E2F4 631 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 CYTH3O43739 400 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 DHX16O60231 1041 aaKnown RBP22.93■■□□□ 1.26
LIME1-205ENST00000480139 ECM2O94769 699 aaPredicted RBP22.93■■□□□ 1.26
LIME1-205ENST00000480139 SNAP25P60880 206 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 PRKCZQ05513 592 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 IRF5Q13568 498 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 GRB14Q14449 540 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 RTN1Q16799 776 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 MORN1Q5T089 497 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 NBPF11Q86T75 865 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 CCDC144CPQ8IYA2 1237 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 ZNF274Q96GC6 653 aaPredicted RBP22.93■■□□□ 1.26
LIME1-205ENST00000480139 CCPG1Q9ULG6 757 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 HPS5Q9UPZ3 1129 aa22.93■■□□□ 1.26
LIME1-205ENST00000480139 ZBTB5O15062 677 aa22.92■■□□□ 1.26
LIME1-205ENST00000480139 METAP2P50579 478 aaKnown RBP eCLIP22.92■■□□□ 1.26
LIME1-205ENST00000480139 NEK4P51957 841 aa22.92■■□□□ 1.26
LIME1-205ENST00000480139 WDR78Q5VTH9 848 aa22.92■■□□□ 1.26
LIME1-205ENST00000480139 FBXO46Q6PJ61 603 aaPredicted RBP22.92■■□□□ 1.26
LIME1-205ENST00000480139 RAB11FIP4Q86YS3 637 aa22.92■■□□□ 1.26
LIME1-205ENST00000480139 USP6NLQ92738 828 aa22.92■■□□□ 1.26
LIME1-205ENST00000480139 NUDT12Q9BQG2 462 aa22.92■■□□□ 1.26
LIME1-205ENST00000480139 ZNFX1Q9P2E3 1918 aaKnown RBP22.91■■□□□ 1.26
LIME1-205ENST00000480139 PLEKHA8P1O95397 391 aa22.91■■□□□ 1.26
LIME1-205ENST00000480139 FCER1AP12319 257 aa22.91■■□□□ 1.26
LIME1-205ENST00000480139 PDIA3P30101 505 aaKnown RBP22.91■■□□□ 1.26
LIME1-205ENST00000480139 FLT3LGP49771 235 aa22.91■■□□□ 1.26
LIME1-205ENST00000480139 QRICH1Q2TAL8 776 aa22.91■■□□□ 1.26
LIME1-205ENST00000480139 COL13A1Q5TAT6 717 aaPredicted RBP22.91■■□□□ 1.26
LIME1-205ENST00000480139 SRBD1Q8N5C6 995 aaKnown RBP22.91■■□□□ 1.26
LIME1-205ENST00000480139 ACAD9Q9H845 621 aa22.91■■□□□ 1.26
LIME1-205ENST00000480139 VAT1LQ9HCJ6 419 aa22.91■■□□□ 1.26
LIME1-205ENST00000480139 FAM217BQ9NTX9 383 aaPredicted RBP22.91■■□□□ 1.26
LIME1-205ENST00000480139 GABRQQ9UN88 632 aa22.91■■□□□ 1.26
LIME1-205ENST00000480139 RBBP6Q7Z6E9 1792 aaKnown RBP22.91■■□□□ 1.26
LIME1-205ENST00000480139 XRCC5P13010 732 aaKnown RBP22.9■■□□□ 1.26
LIME1-205ENST00000480139 AK2P54819 239 aa22.9■■□□□ 1.26
LIME1-205ENST00000480139 TRAF1Q13077 416 aa22.9■■□□□ 1.26
LIME1-205ENST00000480139 MAP2K5Q13163 448 aa22.9■■□□□ 1.26
LIME1-205ENST00000480139 TRERF1Q96PN7 1200 aa22.9■■□□□ 1.26
LIME1-205ENST00000480139 RNF146Q9NTX7 359 aa22.9■■□□□ 1.26
LIME1-205ENST00000480139 NAP1L2Q9ULW6 460 aaPredicted RBP22.9■■□□□ 1.26
LIME1-205ENST00000480139 SMCHD1A6NHR9 2005 aa22.9■■□□□ 1.26
LIME1-205ENST00000480139 ABCB11O95342 1321 aa22.89■■□□□ 1.26
LIME1-205ENST00000480139 BAZ2BQ9UIF8 2168 aaKnown RBP22.89■■□□□ 1.26
LIME1-205ENST00000480139 PNMA6FA0A0J9YX94 578 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 HOXC6P09630 235 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 ALAS1P13196 640 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 CDC27P30260 824 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 RGS2P41220 211 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 FUT2Q10981 343 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 KCTD2Q14681 263 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 RABEP1Q15276 862 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 FBXO11Q86XK2 927 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 RRP36Q96EU6 259 aaKnown RBP22.89■■□□□ 1.25
LIME1-205ENST00000480139 PIGSQ96S52 555 aa22.89■■□□□ 1.25
LIME1-205ENST00000480139 MMP19Q99542 508 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms