RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	ANKRD35	Q8N283	1001 aa		28.17	■■■□□ 2.1
CPNE1-223	ENST00000475146	ANKS1A	Q92625	1134 aa		28.17	■■■□□ 2.1
CPNE1-223	ENST00000475146	ACAD9	Q9H845	621 aa		28.17	■■■□□ 2.1
CPNE1-223	ENST00000475146	OGDHL	Q9ULD0	1010 aa		28.17	■■■□□ 2.1
CPNE1-223	ENST00000475146	DIS3	Q9Y2L1	958 aa	Known RBP	28.17	■■■□□ 2.1
CPNE1-223	ENST00000475146	CYB5R4	Q7L1T6	521 aa		28.16	■■■□□ 2.1
CPNE1-223	ENST00000475146	ANKLE1	Q8NAG6	615 aa		28.16	■■■□□ 2.1
CPNE1-223	ENST00000475146	TRPV1	Q8NER1	839 aa		28.16	■■■□□ 2.1
CPNE1-223	ENST00000475146	CCPG1	Q9ULG6	757 aa		28.16	■■■□□ 2.1
CPNE1-223	ENST00000475146	TAF6L	Q9Y6J9	622 aa		28.16	■■■□□ 2.1
CPNE1-223	ENST00000475146	TNRC18	O15417	2968 aa	Predicted RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	PLXNA1	Q9UIW2	1896 aa		28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146		E7EWF7	191 aa		28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	TKFC	Q3LXA3	575 aa		28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	GPATCH4	Q5T3I0	446 aa	Known RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	IFIT1B	Q5T764	474 aa	Known RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	PRPF38B	Q5VTL8	546 aa	Known RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	CASC1	Q6TDU7	716 aa		28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	NCOA7	Q8NI08	942 aa		28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	DIS3L	Q8TF46	1054 aa	Known RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	HTATIP2	Q9BUP3	242 aa		28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	LSG1	Q9H089	658 aa	Known RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	RANBP17	Q9H2T7	1088 aa	Known RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	ANO2	Q9NQ90	1003 aa		28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	DDX20	Q9UHI6	824 aa	Known RBP	28.15	■■■□□ 2.1
CPNE1-223	ENST00000475146	GOLGA8H	P0CJ92	632 aa		28.14	■■■□□ 2.1
CPNE1-223	ENST00000475146	PRAMEF19	Q5SWL8	479 aa		28.14	■■■□□ 2.1
CPNE1-223	ENST00000475146	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	28.14	■■■□□ 2.1	3e-8	■□□□□ 9.3
CPNE1-223	ENST00000475146	PAWR	Q96IZ0	340 aa	Known RBP	28.14	■■■□□ 2.1
CPNE1-223	ENST00000475146	TRERF1	Q96PN7	1200 aa		28.14	■■■□□ 2.1
CPNE1-223	ENST00000475146	DNAJC25-GNG10	A0A024R161	153 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	MSC	O60682	206 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	CDC45	O75419	566 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	ICAM1	P05362	532 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	LHX8	Q68G74	356 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	STOX1	Q6ZVD7	989 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	NECAB2	Q7Z6G3	386 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	TINF2	Q9BSI4	451 aa		28.13	■■■□□ 2.09
CPNE1-223	ENST00000475146	TAL1	P17542	331 aa	Predicted RBP	28.12	■■■□□ 2.09
CPNE1-223	ENST00000475146	DPF3	Q92784	378 aa		28.12	■■■□□ 2.09
CPNE1-223	ENST00000475146	ERICH2	A1L162	156 aa		28.11	■■■□□ 2.09
CPNE1-223	ENST00000475146	IFIT3	O14879	490 aa	Known RBP	28.11	■■■□□ 2.09
CPNE1-223	ENST00000475146	SEC23A	Q15436	765 aa		28.11	■■■□□ 2.09
CPNE1-223	ENST00000475146	A1CF	Q9NQ94	594 aa	Known RBP	28.11	■■■□□ 2.09
CPNE1-223	ENST00000475146	PARP1	P09874	1014 aa	Known RBP	28.1	■■■□□ 2.09
CPNE1-223	ENST00000475146	ASPRV1	Q53RT3	343 aa		28.1	■■■□□ 2.09
CPNE1-223	ENST00000475146	MUM1L1	Q5H9M0	696 aa		28.1	■■■□□ 2.09
CPNE1-223	ENST00000475146	UBA5	Q9GZZ9	404 aa		28.1	■■■□□ 2.09
CPNE1-223	ENST00000475146	CPVL	Q9H3G5	476 aa		28.1	■■■□□ 2.09
CPNE1-223	ENST00000475146	FRMPD3	Q5JV73	1810 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	POTEB2	H3BUK9	544 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	SEPT4	O43236	478 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	SART3	Q15020	963 aa	Known RBP	28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	ANO1	Q5XXA6	986 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	CHST3	Q7LGC8	479 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	MSL3	Q8N5Y2	521 aa	Known RBP	28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	C11orf49	Q9H6J7	331 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	NRBP1	Q9UHY1	535 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	CNPY2	Q9Y2B0	182 aa		28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	MKI67	P46013	3256 aa	Known RBP	28.09	■■■□□ 2.09
CPNE1-223	ENST00000475146	SLC27A2	O14975	620 aa		28.08	■■■□□ 2.09
CPNE1-223	ENST00000475146	MNX1	P50219	401 aa	Predicted RBP	28.08	■■■□□ 2.09
CPNE1-223	ENST00000475146	NSMF	Q6X4W1	530 aa		28.08	■■■□□ 2.09
CPNE1-223	ENST00000475146	ZNF467	Q7Z7K2	595 aa	Predicted RBP	28.08	■■■□□ 2.09
CPNE1-223	ENST00000475146	PNMA2	Q9UL42	364 aa		28.08	■■■□□ 2.09
CPNE1-223	ENST00000475146	PFAS	O15067	1338 aa		28.08	■■■□□ 2.09
CPNE1-223	ENST00000475146	DHX16	O60231	1041 aa	Known RBP	28.07	■■■□□ 2.08
CPNE1-223	ENST00000475146	CNTN2	Q02246	1040 aa		28.07	■■■□□ 2.08
CPNE1-223	ENST00000475146	WTAP	Q15007	396 aa		28.07	■■■□□ 2.08
CPNE1-223	ENST00000475146	CREB3L3	Q68CJ9	461 aa		28.07	■■■□□ 2.08
CPNE1-223	ENST00000475146	MB21D2	Q8IYB1	491 aa	Predicted RBP	28.07	■■■□□ 2.08
CPNE1-223	ENST00000475146	PPP4R2	Q9NY27	417 aa		28.07	■■■□□ 2.08
CPNE1-223	ENST00000475146	SYNGAP1	Q96PV0	1343 aa		28.07	■■■□□ 2.08
CPNE1-223	ENST00000475146	TMEM67	Q5HYA8	995 aa		28.06	■■■□□ 2.08
CPNE1-223	ENST00000475146	FGD4	Q96M96	766 aa		28.06	■■■□□ 2.08
CPNE1-223	ENST00000475146	ANTXR2	P58335	489 aa		28.05	■■■□□ 2.08
CPNE1-223	ENST00000475146	CDC37	Q16543	378 aa	Predicted RBP	28.05	■■■□□ 2.08
CPNE1-223	ENST00000475146	MAMDC4	Q6UXC1	1216 aa		28.05	■■■□□ 2.08
CPNE1-223	ENST00000475146	FAM133A	Q8N9E0	248 aa		28.05	■■■□□ 2.08
CPNE1-223	ENST00000475146	WDR19	Q8NEZ3	1342 aa		28.05	■■■□□ 2.08
CPNE1-223	ENST00000475146	ZHX1	Q9UKY1	873 aa	Predicted RBP	28.05	■■■□□ 2.08
CPNE1-223	ENST00000475146	MYCN	P04198	464 aa	Predicted RBP	28.04	■■■□□ 2.08
CPNE1-223	ENST00000475146	NECTIN1	Q15223	517 aa		28.04	■■■□□ 2.08
CPNE1-223	ENST00000475146	ERICH6B	Q5W0A0	696 aa		28.04	■■■□□ 2.08
CPNE1-223	ENST00000475146	ADGRF4	Q8IZF3	695 aa		28.04	■■■□□ 2.08
CPNE1-223	ENST00000475146	SENP2	Q9HC62	589 aa		28.04	■■■□□ 2.08
CPNE1-223	ENST00000475146	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	28.04	■■■□□ 2.08
CPNE1-223	ENST00000475146	CYP39A1	Q9NYL5	469 aa		28.04	■■■□□ 2.08
CPNE1-223	ENST00000475146	SMCHD1	A6NHR9	2005 aa		28.03	■■■□□ 2.08
CPNE1-223	ENST00000475146	NFIB	O00712	420 aa		28.03	■■■□□ 2.08
CPNE1-223	ENST00000475146	SNAI1	O95863	264 aa	Predicted RBP	28.03	■■■□□ 2.08
CPNE1-223	ENST00000475146	ZNF865	P0CJ78	1059 aa	Predicted RBP	28.03	■■■□□ 2.08
CPNE1-223	ENST00000475146	USH1G	Q495M9	461 aa		28.03	■■■□□ 2.08
CPNE1-223	ENST00000475146	RNF20	Q5VTR2	975 aa		28.03	■■■□□ 2.08
CPNE1-223	ENST00000475146	ARMCX2	Q7L311	632 aa		28.03	■■■□□ 2.08
CPNE1-223	ENST00000475146	EVI5	O60447	810 aa		28.02	■■■□□ 2.08
CPNE1-223	ENST00000475146	RARB	P10826	455 aa		28.02	■■■□□ 2.08
CPNE1-223	ENST00000475146	AKR1A1	P14550	325 aa		28.02	■■■□□ 2.08
CPNE1-223	ENST00000475146	CCDC144CP	Q8IYA2	1237 aa		28.02	■■■□□ 2.08
CPNE1-223	ENST00000475146	STAG2	Q8N3U4	1231 aa		28.02	■■■□□ 2.08

Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms