RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 SLX4Q8IY92 1834 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 TECP42680 631 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 IKBKBO14920 756 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 GH2P01242 217 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 MDM2Q00987 491 aaPredicted RBP15.46■□□□□ 0.07
CLK3-203ENST00000454830 NCAPHQ15003 741 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 ZYXQ15942 572 aaKnown RBP15.46■□□□□ 0.07
CLK3-203ENST00000454830 IL17AQ16552 155 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 BPIFA3Q9BQP9 254 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 KANSL2Q9H9L4 492 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 SERPINA10Q9UK55 444 aa15.46■□□□□ 0.07
CLK3-203ENST00000454830 PSMD14O00487 310 aa15.46■□□□□ 0.06
CLK3-203ENST00000454830 PES1O00541 588 aaKnown RBP15.46■□□□□ 0.06
CLK3-203ENST00000454830 CBFA2T2O43439 604 aa15.46■□□□□ 0.06
CLK3-203ENST00000454830 SFPQP23246 707 aaKnown RBP eCLIP15.46■□□□□ 0.06
CLK3-203ENST00000454830 LONP1P36776 959 aaKnown RBP15.46■□□□□ 0.06
CLK3-203ENST00000454830 KIAA1524Q8TCG1 905 aa15.46■□□□□ 0.06
CLK3-203ENST00000454830 FMR1Q06787 632 aaKnown RBP eCLIP15.45■□□□□ 0.06
CLK3-203ENST00000454830 USH1GQ495M9 461 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 NIM1KQ8IY84 436 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 CDK5RAP3Q96JB5 506 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 DNAJC18Q9H819 358 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 JMJD4Q9H9V9 463 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.45■□□□□ 0.06
CLK3-203ENST00000454830 OR52Z1P0C646 297 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 GPATCH4Q5T3I0 446 aaKnown RBP15.45■□□□□ 0.06
CLK3-203ENST00000454830 RTKN2Q8IZC4 609 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 CDC25BP30305 580 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 CUL4BQ13620 913 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 ARL6IP4Q66PJ3 421 aaKnown RBP15.45■□□□□ 0.06
CLK3-203ENST00000454830 DPF2Q92785 391 aa15.45■□□□□ 0.06
CLK3-203ENST00000454830 MIGA2Q7L4E1 593 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 SH3BP5LQ7L8J4 393 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 LRRC8AQ8IWT6 810 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 SAMSN1Q9NSI8 373 aaKnown RBP15.44■□□□□ 0.06
CLK3-203ENST00000454830 PNMA6FA0A0J9YX94 578 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 C7orf43Q8WVR3 580 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 RIOX1Q9H6W3 641 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 CTNND2Q9UQB3 1225 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 HDLBPQ00341 1268 aaKnown RBP15.44■□□□□ 0.06
CLK3-203ENST00000454830 MORC3Q14149 939 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 PSTPIP2Q9H939 334 aa15.44■□□□□ 0.06
CLK3-203ENST00000454830 COL11A2P13942 1736 aaPredicted RBP15.43■□□□□ 0.06
CLK3-203ENST00000454830 MRPL12P52815 198 aaKnown RBP15.43■□□□□ 0.06
CLK3-203ENST00000454830 PPP4R3BQ5MIZ7 849 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 CABP7Q86V35 215 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 POTEDQ86YR6 584 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 DAGLBQ8NCG7 672 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 PYM1Q9BRP8 204 aaKnown RBP15.43■□□□□ 0.06
CLK3-203ENST00000454830 PCDHA1Q9Y5I3 950 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 GOLGA8FQ08AF8 430 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 GOLGA8DPQ0D2H9 430 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 CALCRLQ16602 461 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 CUL5Q93034 780 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 TMEM232C9JQI7 657 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 GSDMDP57764 484 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 RSBN1LQ6PCB5 846 aaPredicted RBP15.43■□□□□ 0.06
CLK3-203ENST00000454830 TRIML1Q8N9V2 468 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 JDP2Q8WYK2 163 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 IDI2Q9BXS1 227 aa15.43■□□□□ 0.06
CLK3-203ENST00000454830 SYNRGQ9UMZ2 1314 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 DDX60LQ5H9U9 1706 aaKnown RBP15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L15C9J2P7 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L13C9JLJ4 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L11C9JVI0 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L18D6R9N7 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L22D6RA61 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L17D6RBQ6 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L19D6RCP7 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L20D6RJB6 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 F5H6K3 240 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 TDP2O95551 362 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 KLRC3Q07444 240 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L24Q0WX57 530 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 USP17L6PQ6QN14 398 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 TMEM179Q6ZVK1 233 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 DISC1Q9NRI5 854 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 ZBTB5O15062 677 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 SSBP05455 408 aaKnown RBP eCLIP15.42■□□□□ 0.06
CLK3-203ENST00000454830 TMEM266Q2M3C6 531 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 GSDMAQ96QA5 445 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 EHD4Q9H223 541 aa15.42■□□□□ 0.06
CLK3-203ENST00000454830 QRICH1Q2TAL8 776 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 CALML4Q96GE6 196 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 UQCRHLA0A096LP55 91 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 IGKV6D-41A0A0C4DH26 115 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 MYO1BO43795 1136 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 GTPBP6O43824 516 aaPredicted RBP15.41■□□□□ 0.06
CLK3-203ENST00000454830 UQCRHP07919 91 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 POLD1P28340 1107 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 DPYDQ12882 1025 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 CDC37Q16543 378 aaPredicted RBP15.41■□□□□ 0.06
CLK3-203ENST00000454830 C4orf32Q8N8J7 132 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 CPLX3Q8WVH0 158 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 CCDC47Q96A33 483 aaKnown RBP15.41■□□□□ 0.06
CLK3-203ENST00000454830 LRWD1Q9UFC0 647 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 BCS1LQ9Y276 419 aa15.41■□□□□ 0.06
CLK3-203ENST00000454830 SMARCA1P28370 1054 aa15.4■□□□□ 0.06
CLK3-203ENST00000454830 SARSP49591 514 aaKnown RBP15.4■□□□□ 0.06
CLK3-203ENST00000454830 GJA10Q969M2 543 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms