RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 IRAK1P51617 712 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 CUL4BQ13620 913 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 KCNJ12Q14500 433 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 MFSD6Q6ZSS7 791 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 SH2D3CQ8N5H7 860 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 MAGEB6Q8N7X4 407 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 NELFBQ8WX92 580 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 CCDC97Q96F63 343 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 LACRTQ9GZZ8 138 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 REXO2Q9Y3B8 237 aaKnown RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 NALCNQ8IZF0 1738 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 A0A087WUV0 522 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 FAM237AA0A1B0GTK4 181 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 CYP27B1O15528 508 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 IPO7O95373 1038 aaKnown RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 FMNL1O95466 1100 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 PDCLQ13371 301 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 TTF1Q15361 905 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 ANKRD13CQ8N6S4 541 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 MYCBPQ99417 103 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 LUC7L2Q9Y383 392 aaKnown RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 CAPN7Q9Y6W3 813 aa11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 V9GY48 417 aaPredicted RBP11.08□□□□□ -0.64
PTCHD4-202ENST00000398738 CDHR2Q9BYE9 1310 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 PDE6AP16499 860 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 MCM7P33993 719 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 ADD2P35612 726 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 RNF187Q5TA31 235 aaPredicted RBP11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 MMS22LQ6ZRQ5 1243 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 FBXL16Q8N461 479 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 TRIML1Q8N9V2 468 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 CERKQ8TCT0 537 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 TMEM87BQ96K49 555 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 RUFY1Q96T51 708 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 SHTN1A0MZ66 631 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 SPTLC1O15269 473 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 PRPF6O94906 941 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 INPP5BP32019 993 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 KLK7P49862 253 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 RNASE9P60153 205 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 SF3A3Q12874 501 aaKnown RBP eCLIP11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 SLC4A8Q2Y0W8 1093 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 KRT26Q7Z3Y9 468 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 ANKRD18AQ8IVF6 992 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 WASF1Q92558 559 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 CAPS2Q9BXY5 557 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 GPR108Q9NPR9 543 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 STRN4Q9NRL3 753 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 CEP131Q9UPN4 1083 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 TACC3Q9Y6A5 838 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 NDUFAB1O14561 156 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 TRIM21P19474 475 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 NAP1L1P55209 391 aaKnown RBP11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 AMPD2Q01433 879 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 NT5DC1Q5TFE4 455 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 EP400NLQ6ZTU2 488 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 CTCFLQ8NI51 663 aaPredicted RBP11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 NCAPGQ9BPX3 1015 aa11.07□□□□□ -0.64
PTCHD4-202ENST00000398738 MYO1FO00160 1098 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 IFNAR1P17181 557 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 PBX1P40424 430 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 ATP2B2Q01814 1243 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 PAK1Q13153 545 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 TCIRG1Q13488 830 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 VARS2Q5ST30 1063 aaKnown RBP11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 CDKAL1Q5VV42 579 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 IFNL3Q8IZI9 196 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 UBAC1Q9BSL1 405 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 AGPAT5Q9NUQ2 364 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 DMGDHQ9UI17 866 aaKnown RBP11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 AGPSO00116 658 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 FDX1P10109 184 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 CCDC96Q2M329 555 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 PPP2R2DQ66LE6 453 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 CRACR2BQ8N4Y2 399 aaPredicted RBP11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 OR8K1Q8NGG5 319 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 ARL8AQ96BM9 186 aa11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 JPH2Q9BR39 696 aaPredicted RBP11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 BAZ2BQ9UIF8 2168 aaKnown RBP11.06□□□□□ -0.64
PTCHD4-202ENST00000398738 RPS6KA5O75582 802 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 HNRNPH1P31943 449 aaKnown RBP11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 TCP11X2Q5H9J9 407 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 MCTP2Q6DN12 878 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 WDR93Q6P2C0 686 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 TRAPPC11Q7Z392 1133 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 SAMD7Q7Z3H4 446 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 LRRC1Q9BTT6 524 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 EPB41L4AQ9HCS5 686 aaPredicted RBP11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 SLC4A4Q9Y6R1 1079 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 B4DLN1 442 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 ATP2C2O75185 946 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 DEXIO95424 95 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 SSBP05455 408 aaKnown RBP eCLIP11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 HERVK_113P62684 666 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 TUBB2AQ13885 445 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 TOM1L2Q6ZVM7 507 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 FANCBQ8NB91 859 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 IFT81Q8WYA0 676 aa11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 STRBPQ96SI9 672 aaKnown RBP11.05□□□□□ -0.64
PTCHD4-202ENST00000398738 TUBB2BQ9BVA1 445 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms