RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 PCDHA7Q9UN72 937 aa8.4□□□□□ -1.07
VTI1A-201ENST00000393077 CD2APQ9Y5K6 639 aa8.4□□□□□ -1.07
VTI1A-201ENST00000393077 USP6P35125 1406 aa8.4□□□□□ -1.07
VTI1A-201ENST00000393077 SRGAP2O75044 1071 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 SUN1O94901 812 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 TNNC1P63316 161 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 GUCY2DQ02846 1103 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 SPAG1Q07617 926 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 FBXO41Q8TF61 875 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ATP6V1G3Q96LB4 118 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ELAC2Q9BQ52 826 aaKnown RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 UBA5Q9GZZ9 404 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 SPATA7Q9P0W8 599 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 FRMD4BQ9Y2L6 1034 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 SHOX2O60902 331 aaPredicted RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 SMNDC1O75940 238 aaKnown RBP eCLIP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 XBP1P17861 261 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ELF3P78545 371 aaPredicted RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 KIAA0753Q2KHM9 967 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 PHLDB3Q6NSJ2 640 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 MAEAQ7L5Y9 396 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 IL17REQ8NFR9 667 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 CCDC42Q96M95 316 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 CARD9Q9H257 536 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ATXN10Q9UBB4 475 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 EPN1Q9Y6I3 576 aaPredicted RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 CAMSAP1Q5T5Y3 1602 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 TMEM94Q12767 1356 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 PTPDC1A2A3K4 754 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 LIN7AO14910 233 aaPredicted RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 FNTAP49354 379 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 BLMHQ13867 455 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 RALYLQ86SE5 291 aaKnown RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 DPF2Q92785 391 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 CDK5RAP3Q96JB5 506 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 PANX2Q96RD6 677 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 SIKE1Q9BRV8 207 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 MOV10L1Q9BXT6 1211 aaKnown RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 STMN4Q9H169 189 aaPredicted RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ATP7BP35670 1465 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 CCT8L1PA6NM43 557 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 YY1P25490 414 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 CASP14P31944 242 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 TMED10P49755 219 aaKnown RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 RCN2Q14257 317 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 SLC4A8Q2Y0W8 1093 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ANKRD20A2Q5SQ80 823 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ANKRD20A1Q5TYW2 823 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ANKRD20A3Q5VUR7 823 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 PPP4R3AQ6IN85 833 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 COPS6Q7L5N1 327 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 MLKLQ8NB16 471 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 DYDC2Q96IM9 177 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 NDNQ99608 321 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 BPIFA3Q9BQP9 254 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 OSBPL3Q9H4L5 887 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 HMG20BQ9P0W2 317 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 RASAL2Q9UJF2 1139 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 ITGB1BP2Q9UKP3 347 aa8.39□□□□□ -1.07
VTI1A-201ENST00000393077 NOVA2Q9UNW9 492 aaKnown RBP8.39□□□□□ -1.07
VTI1A-201ENST00000393077 PIK3R4Q99570 1358 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 A0A087WZG4 1122 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 KCNA3P22001 575 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 IFNAR2P48551 515 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 RASSF2P50749 326 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 MECOMQ03112 1051 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 MAP3K12Q12852 859 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 GLE1Q53GS7 698 aaKnown RBP8.38□□□□□ -1.07
VTI1A-201ENST00000393077 UBE3BQ7Z3V4 1068 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 APBB1IPQ7Z5R6 666 aaPredicted RBP8.38□□□□□ -1.07
VTI1A-201ENST00000393077 TMCO5AQ8N6Q1 288 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 SMC1BQ8NDV3 1235 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 XAGE3Q8WTP9 111 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 ZSWIM6Q9HCJ5 1215 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 CCDC87Q9NVE4 849 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 KLHL14Q9P2G3 628 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 PPP1R9AQ9ULJ8 1098 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 FRMPD1Q5SYB0 1578 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 SPECC1L-ADORA2AF8WAN1 911 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 RNMTO43148 476 aaKnown RBP8.38□□□□□ -1.07
VTI1A-201ENST00000393077 KCNQ3O43525 872 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 PRPF6O94906 941 aaKnown RBP8.38□□□□□ -1.07
VTI1A-201ENST00000393077 UPP2O95045 317 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 GSTA2P09210 222 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 VPS41P49754 854 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 RBL2Q08999 1139 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 CBX3Q13185 183 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 PNOCQ13519 176 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 MTMR3Q13615 1198 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 WASHC4Q2M389 1173 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 CWF19L2Q2TBE0 894 aaKnown RBP8.38□□□□□ -1.07
VTI1A-201ENST00000393077 PPP1R15BQ5SWA1 713 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 KDM7AQ6ZMT4 941 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 DNAJC9Q8WXX5 260 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 MMS19Q96T76 1030 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 NUP58Q9BVL2 599 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 NACA2Q9H009 215 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 CCDC8Q9H0W5 538 aaPredicted RBP8.38□□□□□ -1.07
VTI1A-201ENST00000393077 EPB41L5Q9HCM4 733 aa8.38□□□□□ -1.07
VTI1A-201ENST00000393077 SLAIN2Q9P270 581 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms