RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NFXL1Q6ZNB6 911 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 CHST3Q7LGC8 479 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 FERMT3Q86UX7 667 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 NSUN7Q8NE18 718 aaKnown RBP11.78□□□□□ -0.52
VPS53-202ENST00000389040 CHMP4CQ96CF2 233 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 ZNF274Q96GC6 653 aaPredicted RBP11.78□□□□□ -0.52
VPS53-202ENST00000389040 P2RX7Q99572 595 aaKnown RBP11.78□□□□□ -0.52
VPS53-202ENST00000389040 SLF1Q9BQI6 1058 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 MORF4L1Q9UBU8 362 aa11.78□□□□□ -0.52
VPS53-202ENST00000389040 ATP2A1O14983 1001 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 RAD21O60216 631 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 PARP1P09874 1014 aaKnown RBP11.77□□□□□ -0.53
VPS53-202ENST00000389040 BCRP11274 1271 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 PDIA3P30101 505 aaKnown RBP11.77□□□□□ -0.53
VPS53-202ENST00000389040 CCNA1P78396 465 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 TRAF1Q13077 416 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 FAM184AQ8NB25 1140 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 GPRC5AQ8NFJ5 357 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 DDX11Q96FC9 970 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 MAF1Q9H063 256 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 MYH8P13535 1937 aa11.77□□□□□ -0.53
VPS53-202ENST00000389040 CCDC196A0A1B0GTZ2 297 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 SPDYE16A6NNV3 312 aaPredicted RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 TMEM232C9JQI7 657 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 GPR25O00155 361 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 ZBED4O75132 1171 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 HSPA1AP0DMV8 641 aaKnown RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 HSPA1BP0DMV9 641 aaKnown RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 CYP2C8P10632 490 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 HMGN5P82970 282 aaKnown RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 SP3Q02447 781 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 ZNF654Q8IZM8 581 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 RBSNQ9H1K0 784 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 LOC285556D6RIA3 1793 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 PTPDC1A2A3K4 754 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 PALM3A6NDB9 673 aaPredicted RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 H3BQV1 296 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 VWA5AO00534 786 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 FKTNO75072 461 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 CTDNEP1O95476 244 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 TBC1D8O95759 1140 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 CCT2P78371 535 aaKnown RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 DGKZQ13574 1117 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 KIF22Q14807 665 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 GRM4Q14833 912 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 CCDC96Q2M329 555 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 CCDC183Q5T5S1 534 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 IFFO2Q5TF58 517 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 CTCFLQ8NI51 663 aaPredicted RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 ANP32BQ92688 251 aaKnown RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 ERO1AQ96HE7 468 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 PRDM10Q9NQV6 1147 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 RBM28Q9NW13 759 aaKnown RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 NAP1L2Q9ULW6 460 aaPredicted RBP11.76□□□□□ -0.53
VPS53-202ENST00000389040 KIF3AQ9Y496 699 aa11.76□□□□□ -0.53
VPS53-202ENST00000389040 ELP1O95163 1332 aa11.75□□□□□ -0.53
VPS53-202ENST00000389040 SLC25A27O95847 323 aa11.75□□□□□ -0.53
VPS53-202ENST00000389040 APOA5Q6Q788 366 aa11.75□□□□□ -0.53
VPS53-202ENST00000389040 FANCBQ8NB91 859 aa11.75□□□□□ -0.53
VPS53-202ENST00000389040 SHCBP1Q8NEM2 672 aa11.75□□□□□ -0.53
VPS53-202ENST00000389040 SLC38A10Q9HBR0 1119 aa11.75□□□□□ -0.53
VPS53-202ENST00000389040 RBPJLQ9UBG7 517 aa11.75□□□□□ -0.53
VPS53-202ENST00000389040 CTDP1Q9Y5B0 961 aaPredicted RBP11.75□□□□□ -0.53
VPS53-202ENST00000389040 ZBTB43O43298 467 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 MAPK4P31152 587 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 CCDC173Q0VFZ6 552 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 IKQ13123 557 aaPredicted RBP11.74□□□□□ -0.53
VPS53-202ENST00000389040 FAM173BQ6P4H8 233 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 KCTD1Q719H9 257 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 NUP88Q99567 741 aaPredicted RBP11.74□□□□□ -0.53
VPS53-202ENST00000389040 SCAND2PQ9GZW5 306 aaPredicted RBP11.74□□□□□ -0.53
VPS53-202ENST00000389040 ZSCAN16Q9H4T2 348 aaPredicted RBP11.74□□□□□ -0.53
VPS53-202ENST00000389040 MROH8Q9H579 483 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 NCOA5Q9HCD5 579 aaKnown RBP11.74□□□□□ -0.53
VPS53-202ENST00000389040 GPHNQ9NQX3 736 aaPredicted RBP11.74□□□□□ -0.53
VPS53-202ENST00000389040 MAD2L2Q9UI95 211 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 SPDYE4A6NLX3 237 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 KLRF2D3W0D1 207 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 FOXN1O15353 648 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 STRNO43815 780 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 LETM1O95202 739 aaPredicted RBP11.74□□□□□ -0.53
VPS53-202ENST00000389040 PRMT2P55345 433 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 ERVK-9P63128 1117 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 ERVK-24P63145 666 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 RESTQ13127 1097 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 TKFCQ3LXA3 575 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 SYDE2Q5VT97 1194 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 ANKRD13CQ8N6S4 541 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 TEX13BQ9BXU2 312 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 TSPY26PQ9H489 355 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 PRR12Q9ULL5 1215 aa11.74□□□□□ -0.53
VPS53-202ENST00000389040 PCNTO95613 3336 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 PTPRFP10586 1907 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 NID2Q14112 1375 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 KLF18A0A0U1RQI7 1052 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 GOLGA8BA8MQT2 603 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 DHX16O60231 1041 aaKnown RBP11.73□□□□□ -0.53
VPS53-202ENST00000389040 HSPA8P11142 646 aaKnown RBP11.73□□□□□ -0.53
VPS53-202ENST00000389040 HOXD10P28358 340 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 LACTBP83111 547 aaPredicted RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms