RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.3■■□□□ 11e-7■■■■□ 23.7
USP48-201ENST00000308271 TCP11X2Q5H9J9 407 aa21.3■■□□□ 1
USP48-201ENST00000308271 ACTR5Q9H9F9 607 aaPredicted RBP21.3■■□□□ 1
USP48-201ENST00000308271 NHEJ1Q9H9Q4 299 aaPredicted RBP21.3■■□□□ 1
USP48-201ENST00000308271 FYB2Q5VWT5 728 aa21.29■■□□□ 1
USP48-201ENST00000308271 ZNF365Q70YC5 407 aa21.29■■□□□ 1
USP48-201ENST00000308271 ABHD10Q9NUJ1 306 aa21.29■■□□□ 1
USP48-201ENST00000308271 ARPP21Q9UBL0 812 aaPredicted RBP21.29■■□□□ 1
USP48-201ENST00000308271 ASIC3Q9UHC3 531 aa21.29■■□□□ 1
USP48-201ENST00000308271 ADGRB3O60242 1522 aa21.29■■□□□ 1
USP48-201ENST00000308271 LTKP29376 864 aa21.29■■□□□ 1
USP48-201ENST00000308271 GJC1P36383 396 aa21.29■■□□□ 1
USP48-201ENST00000308271 FAM47AQ5JRC9 791 aa21.29■■□□□ 1
USP48-201ENST00000308271 CCDC105Q8IYK2 499 aa21.29■■□□□ 1
USP48-201ENST00000308271 FAM169AQ9Y6X4 670 aa21.29■■□□□ 1
USP48-201ENST00000308271 ANO9A1A5B4 782 aa21.29■■□□□ 1
USP48-201ENST00000308271 ROBO2Q9HCK4 1378 aa21.29■■□□□ 1
USP48-201ENST00000308271 ARAP3Q8WWN8 1544 aa21.29■■□□□ 1
USP48-201ENST00000308271 ANKRD65E5RJM6 399 aa21.29■■□□□ 1
USP48-201ENST00000308271 LAD1O00515 517 aa21.29■■□□□ 1
USP48-201ENST00000308271 EEF2KMTQ96G04 330 aa21.29■■□□□ 1
USP48-201ENST00000308271 TBC1D7Q9P0N9 293 aa21.29■■□□□ 1
USP48-201ENST00000308271 PRDM4Q9UKN5 801 aa21.29■■□□□ 1
USP48-201ENST00000308271 CLGNO14967 610 aa21.28■■□□□ 1
USP48-201ENST00000308271 ATP2A2P16615 1042 aaKnown RBP21.28■■□□□ 1
USP48-201ENST00000308271 PHKA1P46020 1223 aa21.28■■□□□ 1
USP48-201ENST00000308271 POLR2FP61218 127 aaKnown RBP21.28■■□□□ 1
USP48-201ENST00000308271 EPSTI1Q96J88 318 aa21.28■■□□□ 1
USP48-201ENST00000308271 IL25Q9H293 177 aa21.28■■□□□ 1
USP48-201ENST00000308271 SMCO2A6NFE2 343 aa21.28■■□□□ 1
USP48-201ENST00000308271 H2AFZP0C0S5 128 aa21.28■■□□□ 1
USP48-201ENST00000308271 PICALMQ13492 652 aa21.28■■□□□ 1
USP48-201ENST00000308271 H2AFVQ71UI9 128 aa21.28■■□□□ 1
USP48-201ENST00000308271 WHAMMQ8TF30 809 aa21.28■■□□□ 1
USP48-201ENST00000308271 BICD1Q96G01 975 aa21.28■■□□□ 1
USP48-201ENST00000308271 SLC39A2Q9NP94 309 aa21.28■■□□□ 1
USP48-201ENST00000308271 ZSWIM5Q9P217 1185 aa21.28■■□□□ 1
USP48-201ENST00000308271 IQGAP1P46940 1657 aa21.28■■□□□ 1
USP48-201ENST00000308271 ABCC12Q96J65 1359 aa21.28■■□□□ 1
USP48-201ENST00000308271 IGKV5-2P06315 115 aa21.28■■□□□ 1
USP48-201ENST00000308271 NR1D1P20393 614 aa21.28■■□□□ 1
USP48-201ENST00000308271 STAT1P42224 750 aa21.28■■□□□ 1
USP48-201ENST00000308271 SDR42E1Q8WUS8 393 aa21.28■■□□□ 1
USP48-201ENST00000308271 ODF2LQ9ULJ1 636 aa21.28■■□□□ 1
USP48-201ENST00000308271 STK24Q9Y6E0 443 aa21.28■■□□□ 1
USP48-201ENST00000308271 CCDC197Q8NCU1 140 aa21.28■■□□□ 1
USP48-201ENST00000308271 KAT6BQ8WYB5 2073 aa21.27■■□□□ 1
USP48-201ENST00000308271 GCKP35557 465 aa21.27■■□□□ 1
USP48-201ENST00000308271 CEP63Q96MT8 703 aa21.27■■□□□ 1
USP48-201ENST00000308271 PSD3Q9NYI0 1048 aa21.27■■□□□ 1
USP48-201ENST00000308271 USPL1Q5W0Q7 1092 aa21.27■■□□□ 1
USP48-201ENST00000308271 MB21D1Q8N884 522 aa21.27■■□□□ 1
USP48-201ENST00000308271 CCDC63Q8NA47 563 aa21.27■■□□□ 1
USP48-201ENST00000308271 VCXQ9H320 206 aa21.27■■□□□ 1
USP48-201ENST00000308271 STK36Q9NRP7 1315 aa21.27■■□□□ 1
USP48-201ENST00000308271 HIP1RO75146 1068 aa21.27■■□□□ 1
USP48-201ENST00000308271 CLTAP09496 248 aa21.27■■□□□ 1
USP48-201ENST00000308271 TECP42680 631 aa21.27■■□□□ 1
USP48-201ENST00000308271 SF3A3Q12874 501 aaKnown RBP eCLIP21.27■■□□□ 1
USP48-201ENST00000308271 CCDC38Q502W7 563 aa21.27■■□□□ 1
USP48-201ENST00000308271 JPH2Q9BR39 696 aaPredicted RBP21.27■■□□□ 1
USP48-201ENST00000308271 CRB1P82279 1406 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 CCNE1P24864 410 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 RASSF2P50749 326 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 SF3B2Q13435 895 aaKnown RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 MAN2A1Q16706 1144 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 MUM1L1Q5H9M0 696 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 EPHA10Q5JZY3 1008 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 NEK8Q86SG6 692 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 TEX11Q8IYF3 940 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 U2AF1L4Q8WU68 220 aaKnown RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 DPF2Q92785 391 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 AK8Q96MA6 479 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 DPH5Q9H2P9 285 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 KLHL14Q9P2G3 628 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 HGSO14964 777 aaPredicted RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 XRCC5P13010 732 aaKnown RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 CYP27A1Q02318 531 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 TPTE2Q6XPS3 522 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 KIFAP3Q92845 792 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 DNM3Q9UQ16 869 aa21.26■□□□□ 0.99
USP48-201ENST00000308271 HMGB1P1B2RPK0 211 aaPredicted RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 RBM43Q6ZSC3 357 aaKnown RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 ARMCX3Q9UH62 379 aaPredicted RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 FEZ2Q9UHY8 353 aaPredicted RBP21.26■□□□□ 0.99
USP48-201ENST00000308271 STX2P32856 288 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 SHC4Q6S5L8 630 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 RNF10Q8N5U6 811 aaKnown RBP21.25■□□□□ 0.99
USP48-201ENST00000308271 PNMA1Q8ND90 353 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 GPCPD1Q9NPB8 672 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 JAG2Q9Y219 1238 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 KDM3AQ9Y4C1 1321 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 USP14P54578 494 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 ST5P78524 1137 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 GLE1Q53GS7 698 aaKnown RBP21.25■□□□□ 0.99
USP48-201ENST00000308271 SPATA24Q86W54 205 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 FAM114A2Q9NRY5 505 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 BZW2Q9Y6E2 419 aaKnown RBP21.25■□□□□ 0.99
USP48-201ENST00000308271 ZBTB22O15209 634 aa21.25■□□□□ 0.99
USP48-201ENST00000308271 GGCXP38435 758 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms