RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 TRIM60Q495X7 471 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 C12orf60Q5U649 245 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 PADI6Q6TGC4 694 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 TTC13Q8NBP0 860 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 BADQ92934 168 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 TRIM43Q96BQ3 446 aaPredicted RBP11.19□□□□□ -0.62
CNOT9-202ENST00000295701 ARHGEF10LQ9HCE6 1279 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 PRDM5Q9NQX1 630 aaPredicted RBP11.19□□□□□ -0.62
CNOT9-202ENST00000295701 ZBTB40Q9NUA8 1239 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 SWAP70Q9UH65 585 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 MCM3APO60318 1980 aa11.19□□□□□ -0.62
CNOT9-202ENST00000295701 KBTBD13C9JR72 458 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 CTR9Q6PD62 1173 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 RPAP2Q8IXW5 612 aaPredicted RBP11.18□□□□□ -0.62
CNOT9-202ENST00000295701 MB21D1Q8N884 522 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 ARRDC4Q8NCT1 418 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 LENG1Q96BZ8 264 aaPredicted RBP11.18□□□□□ -0.62
CNOT9-202ENST00000295701 HAUS7Q99871 368 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.18□□□□□ -0.62
CNOT9-202ENST00000295701 PUS7LQ9H0K6 701 aaKnown RBP11.18□□□□□ -0.62
CNOT9-202ENST00000295701 MROH8Q9H579 483 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 ATP8A2Q9NTI2 1148 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 PRKAG2Q9UGJ0 569 aa11.18□□□□□ -0.62
CNOT9-202ENST00000295701 WDR46O15213 610 aaKnown RBP11.17□□□□□ -0.62
CNOT9-202ENST00000295701 RAD21O60216 631 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 RAB11FIP3O75154 756 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 PGK1P00558 417 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 FCER1AP12319 257 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 ATP5JP18859 108 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 ITGB8P26012 769 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 TLE2Q04725 743 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 FAM83BQ5T0W9 1011 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 C16orf86Q6ZW13 317 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 ABRAQ8N0Z2 381 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 REPS2Q8NFH8 660 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 MMP19Q99542 508 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 NUP88Q99567 741 aaPredicted RBP11.17□□□□□ -0.62
CNOT9-202ENST00000295701 PDLIM7Q9NR12 457 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 ADAMTS5Q9UNA0 930 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 SLC4A4Q9Y6R1 1079 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 CDH23Q9H251 3354 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 MYH4Q9Y623 1939 aa11.17□□□□□ -0.62
CNOT9-202ENST00000295701 VWA5AO00534 786 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 EPHB4P54760 987 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 SNX17Q15036 470 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 ZNF792Q3KQV3 632 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 FAM109BQ6ICB4 259 aaPredicted RBP11.16□□□□□ -0.62
CNOT9-202ENST00000295701 RIOX2Q8IUF8 465 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 CCDC17Q96LX7 622 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 COL25A1Q9BXS0 654 aaPredicted RBP11.16□□□□□ -0.62
CNOT9-202ENST00000295701 SLC5A4Q9NY91 659 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 ZNF214Q9UL59 606 aaPredicted RBP11.16□□□□□ -0.62
CNOT9-202ENST00000295701 VCANP13611 3396 aa11.16□□□□□ -0.62
CNOT9-202ENST00000295701 GREB1LQ9C091 1923 aaPredicted RBP11.15□□□□□ -0.62
CNOT9-202ENST00000295701 ZBED9Q6R2W3 1325 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 HMMRO75330 724 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 SLC25A27O95847 323 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 ZNF865P0CJ78 1059 aaPredicted RBP11.15□□□□□ -0.62
CNOT9-202ENST00000295701 STAT3P40763 770 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 UBE3CQ15386 1083 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 C20orf194Q5TEA3 1177 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 CDX2Q99626 313 aaPredicted RBP11.15□□□□□ -0.62
CNOT9-202ENST00000295701 TINF2Q9BSI4 451 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 SEMA6BQ9H3T3 888 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 SH2D4AQ9H788 454 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 XPNPEP3Q9NQH7 507 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 PPP1R9AQ9ULJ8 1098 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 DDX19BQ9UMR2 479 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 RIPK3Q9Y572 518 aa11.15□□□□□ -0.62
CNOT9-202ENST00000295701 GSG1L2A8MUP6 293 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 RGS20O76081 388 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 RARBP10826 455 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 SLC4A3P48751 1232 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 KCNC4Q03721 635 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 ZNF697Q5TEC3 545 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 TSHZ3Q63HK5 1081 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.14□□□□□ -0.63
CNOT9-202ENST00000295701 STRBPQ96SI9 672 aaKnown RBP11.14□□□□□ -0.63
CNOT9-202ENST00000295701 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.14□□□□□ -0.63
CNOT9-202ENST00000295701 TTYH1Q9H313 450 aaPredicted RBP11.14□□□□□ -0.63
CNOT9-202ENST00000295701 KANSL2Q9H9L4 492 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 PHF24Q9UPV7 400 aa11.14□□□□□ -0.63
CNOT9-202ENST00000295701 A0A1W2PQ45 241 aaPredicted RBP11.13□□□□□ -0.63
CNOT9-202ENST00000295701 A0A1W2PQY0 241 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 MINDY4BA8MYZ0 360 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 PQBP1O60828 265 aaKnown RBP11.13□□□□□ -0.63
CNOT9-202ENST00000295701 MS4A1P11836 297 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 RASA1P20936 1047 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 KCTD2Q14681 263 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 AMOTL1Q8IY63 956 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 MYLIPQ8WY64 445 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 OSBP2Q969R2 916 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 GOPCQ9HD26 462 aa11.13□□□□□ -0.63
CNOT9-202ENST00000295701 MYADML2A6NDP7 307 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 F5H6K3 240 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 ADAMTS4O75173 837 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 PRDM1O75626 825 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 SNAI1O95863 264 aaPredicted RBP11.12□□□□□ -0.63
CNOT9-202ENST00000295701 NDUFB10O96000 172 aa11.12□□□□□ -0.63
CNOT9-202ENST00000295701 CLTBP09497 229 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms