RNA–Protein interactions for RNA: snR48

snR48, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR48, Length 113 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR48	snR48	SLX4	Q12098	748 aa		0.78	□□□□□ -2.28
snR48	snR48	RBD2	Q12270	262 aa		0.78	□□□□□ -2.28
snR48	snR48	SUL2	Q12325	893 aa		0.78	□□□□□ -2.28
snR48	snR48	SNF3	P10870	884 aa		0.77	□□□□□ -2.29
snR48	snR48	GAC1	P28006	793 aa		0.77	□□□□□ -2.29
snR48	snR48	SAC6	P32599	642 aa	Known RBP	0.77	□□□□□ -2.29
snR48	snR48	MIA40	P36046	403 aa		0.77	□□□□□ -2.29
snR48	snR48	BMT2	P38278	337 aa		0.77	□□□□□ -2.29
snR48	snR48	YJR142W	P47173	342 aa		0.77	□□□□□ -2.29
snR48	snR48	MSO1	P53604	210 aa	Known RBP	0.77	□□□□□ -2.29
snR48	snR48	RSM28	Q03430	361 aa		0.77	□□□□□ -2.29
snR48	snR48	ATG26	Q06321	1198 aa		0.77	□□□□□ -2.29
snR48	snR48	ENT4	Q07872	247 aa		0.77	□□□□□ -2.29
snR48	snR48	SWT1	Q12104	458 aa		0.77	□□□□□ -2.29
snR48	snR48	TMS1	Q12116	473 aa		0.77	□□□□□ -2.29
snR48	snR48	YGR161W-C	Q3E744	92 aa		0.77	□□□□□ -2.29
snR48	snR48	CAR1	P00812	333 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	HHF1	P02309	103 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	ADE3	P07245	946 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	CPR1	P14832	162 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	RIT1	P23796	513 aa		0.76	□□□□□ -2.29
snR48	snR48	LCB1	P25045	558 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	RVS161	P25343	265 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	SGF29	P25554	259 aa		0.76	□□□□□ -2.29
snR48	snR48	CMK1	P27466	446 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	CBF2	P32504	956 aa		0.76	□□□□□ -2.29
snR48	snR48	HCS1	P34243	683 aa		0.76	□□□□□ -2.29
snR48	snR48	MID2	P36027	376 aa		0.76	□□□□□ -2.29
snR48	snR48	NTR2	P36118	322 aa	Predicted RBP	0.76	□□□□□ -2.29
snR48	snR48	MRP21	P38175	177 aa		0.76	□□□□□ -2.29
snR48	snR48	VPS52	P39904	641 aa		0.76	□□□□□ -2.29
snR48	snR48	SHY1	P53266	389 aa		0.76	□□□□□ -2.29
snR48	snR48	ELP3	Q02908	557 aa	Known RBP	0.76	□□□□□ -2.29
snR48	snR48	PHM6	Q05637	104 aa		0.76	□□□□□ -2.29
snR48	snR48	PBA1	Q05778	276 aa		0.76	□□□□□ -2.29
snR48	snR48	ADH2	P00331	348 aa	Known RBP	0.75	□□□□□ -2.29
snR48	snR48	ATR1	P13090	542 aa		0.75	□□□□□ -2.29
snR48	snR48	FRD1	P32614	470 aa	Known RBP	0.75	□□□□□ -2.29
snR48	snR48	YKL097C	P34245	136 aa		0.75	□□□□□ -2.29
snR48	snR48	ESL2	P36168	1195 aa		0.75	□□□□□ -2.29
snR48	snR48	AAP1	P37898	856 aa	Known RBP	0.75	□□□□□ -2.29
snR48	snR48	ROT2	P38138	954 aa		0.75	□□□□□ -2.29
snR48	snR48	SHO1	P40073	367 aa		0.75	□□□□□ -2.29
snR48	snR48	YIL161W	P40449	235 aa	Known RBP	0.75	□□□□□ -2.29
snR48	snR48	YIL067C	P40514	678 aa		0.75	□□□□□ -2.29
snR48	snR48	YFL067W	P43537	175 aa		0.75	□□□□□ -2.29
snR48	snR48	PUS4	P48567	403 aa	Known RBP	0.75	□□□□□ -2.29
snR48	snR48	RLI1	Q03195	608 aa	Known RBP	0.75	□□□□□ -2.29
snR48	snR48	DIC1	Q06143	298 aa		0.75	□□□□□ -2.29
snR48	snR48	THI20	Q08224	551 aa		0.75	□□□□□ -2.29
snR48	snR48	MCM3	P24279	971 aa	Known RBP	0.74	□□□□□ -2.29
snR48	snR48	SWI4	P25302	1093 aa	Known RBP	0.74	□□□□□ -2.29
snR48	snR48	YCR022C	P25620	114 aa		0.74	□□□□□ -2.29
snR48	snR48	SNC1	P31109	117 aa		0.74	□□□□□ -2.29
snR48	snR48	TFC4	P33339	1025 aa		0.74	□□□□□ -2.29
snR48	snR48	ANS1	P38832	159 aa		0.74	□□□□□ -2.29
snR48	snR48	ALG8	P40351	577 aa		0.74	□□□□□ -2.29
snR48	snR48	SWP82	P43554	623 aa		0.74	□□□□□ -2.29
snR48	snR48	MAD3	P47074	515 aa		0.74	□□□□□ -2.29
snR48	snR48	CIA1	Q05583	330 aa		0.74	□□□□□ -2.29
snR48	snR48	GLO2	Q05584	274 aa		0.74	□□□□□ -2.29
snR48	snR48	ADE13	Q05911	482 aa	Known RBP	0.74	□□□□□ -2.29
snR48	snR48	SUP35	P05453	685 aa	Known RBP	0.73	□□□□□ -2.29
snR48	snR48	ARP2	P32381	391 aa	Known RBP	0.73	□□□□□ -2.29
snR48	snR48	MRP4	P32902	394 aa		0.73	□□□□□ -2.29
snR48	snR48	STT3	P39007	718 aa	Known RBP	0.73	□□□□□ -2.29
snR48	snR48	YMR027W	Q04371	470 aa		0.73	□□□□□ -2.29
snR48	snR48	RRN11	Q04712	507 aa		0.73	□□□□□ -2.29
snR48	snR48	APL4	Q12028	832 aa		0.73	□□□□□ -2.29
snR48	snR48	YPS3	Q12303	508 aa		0.73	□□□□□ -2.29
snR48	snR48	ATP2	P00830	511 aa	Known RBP	0.72	□□□□□ -2.29
snR48	snR48	BIK1	P11709	440 aa		0.72	□□□□□ -2.29
snR48	snR48	SIR1	P21691	654 aa		0.72	□□□□□ -2.29
snR48	snR48	PUT3	P25502	979 aa	Predicted RBP	0.72	□□□□□ -2.29
snR48	snR48	YBR071W	P38243	211 aa		0.72	□□□□□ -2.29
snR48	snR48	ARP1	P38696	384 aa		0.72	□□□□□ -2.29
snR48	snR48	ERR3	P42222	437 aa		0.72	□□□□□ -2.29
snR48	snR48	YPL014W	Q02606	381 aa		0.72	□□□□□ -2.29
snR48	snR48	MRPL35	Q06678	367 aa		0.72	□□□□□ -2.29
snR48	snR48	ERV2	Q12284	196 aa		0.72	□□□□□ -2.29
snR48	snR48	YTA7	P40340	1379 aa		0.71	□□□□□ -2.3
snR48	snR48	PGS1	P25578	521 aa		0.71	□□□□□ -2.3
snR48	snR48	ARO2	P28777	376 aa	Known RBP	0.71	□□□□□ -2.3
snR48	snR48	NUP120	P35729	1037 aa		0.71	□□□□□ -2.3
snR48	snR48	LAG1	P38703	411 aa		0.71	□□□□□ -2.3
snR48	snR48	OSH3	P38713	996 aa	Known RBP	0.71	□□□□□ -2.3
snR48	snR48	UBA4	P38820	440 aa		0.71	□□□□□ -2.3
snR48	snR48	CSM2	P40465	213 aa		0.71	□□□□□ -2.3
snR48	snR48	CTF18	P49956	741 aa		0.71	□□□□□ -2.3
snR48	snR48	STR3	P53101	465 aa	Known RBP	0.71	□□□□□ -2.3
snR48	snR48	YMR160W	Q03823	816 aa		0.71	□□□□□ -2.3
snR48	snR48	IWR1	Q07532	353 aa	Predicted RBP	0.71	□□□□□ -2.3
snR48	snR48	ARP7	Q12406	477 aa		0.71	□□□□□ -2.3
snR48	snR48	CTF3	Q12748	733 aa		0.71	□□□□□ -2.3
snR48	snR48	HXK2	P04807	486 aa	Known RBP	0.7	□□□□□ -2.3
snR48	snR48	APE1	P14904	514 aa		0.7	□□□□□ -2.3
snR48	snR48	SPO16	P17122	198 aa		0.7	□□□□□ -2.3
snR48	snR48	SMC3	P47037	1230 aa		0.7	□□□□□ -2.3
snR48	snR48	YJR120W	P47157	116 aa		0.7	□□□□□ -2.3
snR48	snR48	IST1	P53843	298 aa	Predicted RBP	0.7	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 245.5 ms