RNA–Protein interactions for RNA: ENST00000640482.1

VEGFA-230, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,065 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-230ENST00000640482 HIP1O00291 1037 aa29.84■■■□□ 2.37
VEGFA-230ENST00000640482 FGRP09769 529 aa29.84■■■□□ 2.37
VEGFA-230ENST00000640482 HABP4Q5JVS0 413 aaKnown RBP29.84■■■□□ 2.37
VEGFA-230ENST00000640482 SNRNP48Q6IEG0 339 aaKnown RBP29.84■■■□□ 2.37
VEGFA-230ENST00000640482 MAML3Q96JK9 1138 aa29.84■■■□□ 2.37
VEGFA-230ENST00000640482 TOMM22Q9NS69 142 aa29.84■■■□□ 2.37
VEGFA-230ENST00000640482 DIAPH3Q9NSV4 1193 aa29.84■■■□□ 2.37
VEGFA-230ENST00000640482 ISY1Q9ULR0 285 aaKnown RBP29.84■■■□□ 2.37
VEGFA-230ENST00000640482 ATP2A1O14983 1001 aa29.83■■■□□ 2.37
VEGFA-230ENST00000640482 CYBAP13498 195 aa29.83■■■□□ 2.37
VEGFA-230ENST00000640482 GMCL1Q96IK5 515 aa29.83■■■□□ 2.37
VEGFA-230ENST00000640482 IL17RBQ9NRM6 502 aa29.83■■■□□ 2.37
VEGFA-230ENST00000640482 TACC3Q9Y6A5 838 aa29.83■■■□□ 2.37
VEGFA-230ENST00000640482 SLC1A4P43007 532 aa29.82■■■□□ 2.36
VEGFA-230ENST00000640482 IRX6P78412 446 aaPredicted RBP29.82■■■□□ 2.36
VEGFA-230ENST00000640482 SLC38A10Q9HBR0 1119 aa29.82■■■□□ 2.36
VEGFA-230ENST00000640482 FDX1P10109 184 aa29.81■■■□□ 2.36
VEGFA-230ENST00000640482 STAT2P52630 851 aa29.81■■■□□ 2.36
VEGFA-230ENST00000640482 RRP12Q5JTH9 1297 aaKnown RBP29.81■■■□□ 2.36
VEGFA-230ENST00000640482 FAM160B2Q86V87 743 aa29.81■■■□□ 2.36
VEGFA-230ENST00000640482 CPXCR1Q8N123 301 aa29.81■■■□□ 2.36
VEGFA-230ENST00000640482 TRPV1Q8NER1 839 aa29.81■■■□□ 2.36
VEGFA-230ENST00000640482 COLQQ9Y215 455 aaPredicted RBP29.81■■■□□ 2.36
VEGFA-230ENST00000640482 DIS3Q9Y2L1 958 aaKnown RBP29.81■■■□□ 2.36
VEGFA-230ENST00000640482 TMEM232C9JQI7 657 aa29.8■■■□□ 2.36
VEGFA-230ENST00000640482 NMT2O60551 498 aa29.8■■■□□ 2.36
VEGFA-230ENST00000640482 PGK2P07205 417 aa29.8■■■□□ 2.36
VEGFA-230ENST00000640482 PCP11498 1178 aaKnown RBP29.8■■■□□ 2.36
VEGFA-230ENST00000640482 OAZ1P54368 228 aa29.8■■■□□ 2.36
VEGFA-230ENST00000640482 IKQ13123 557 aaPredicted RBP29.8■■■□□ 2.36
VEGFA-230ENST00000640482 CWC27Q6UX04 472 aaKnown RBP29.8■■■□□ 2.36
VEGFA-230ENST00000640482 CHURC1Q8WUH1 139 aa29.8■■■□□ 2.36
VEGFA-230ENST00000640482 HAND2P61296 217 aa29.79■■■□□ 2.36
VEGFA-230ENST00000640482 RAVER2Q9HCJ3 691 aaKnown RBP29.79■■■□□ 2.36
VEGFA-230ENST00000640482 MCCP23508 829 aa29.78■■■□□ 2.36
VEGFA-230ENST00000640482 NOVP48745 357 aa29.78■■■□□ 2.36
VEGFA-230ENST00000640482 SLC4A3P48751 1232 aa29.78■■■□□ 2.36
VEGFA-230ENST00000640482 ZNF792Q3KQV3 632 aa29.78■■■□□ 2.36
VEGFA-230ENST00000640482 STAG1Q8WVM7 1258 aa29.78■■■□□ 2.36
VEGFA-230ENST00000640482 RIPK3Q9Y572 518 aa29.78■■■□□ 2.36
VEGFA-230ENST00000640482 PFASO15067 1338 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 SEPT4O43236 478 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 COL6A1P12109 1028 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 AKNAD1Q5T1N1 836 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 CHRDL2Q6WN34 429 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 MFSD6Q6ZSS7 791 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 DDX11Q96FC9 970 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 RNF41Q9H4P4 317 aaPredicted RBP29.77■■■□□ 2.36
VEGFA-230ENST00000640482 TCP11L1Q9NUJ3 509 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 FBXO40Q9UH90 709 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 NRBP1Q9UHY1 535 aa29.77■■■□□ 2.36
VEGFA-230ENST00000640482 PLA2G6O60733 806 aa29.76■■■□□ 2.35
VEGFA-230ENST00000640482 RCSD1Q6JBY9 416 aa29.76■■■□□ 2.35
VEGFA-230ENST00000640482 CHMP4CQ96CF2 233 aa29.76■■■□□ 2.35
VEGFA-230ENST00000640482 TINF2Q9BSI4 451 aa29.76■■■□□ 2.35
VEGFA-230ENST00000640482 FRMPD3Q5JV73 1810 aa29.75■■■□□ 2.35
VEGFA-230ENST00000640482 ZNF213O14771 459 aa29.75■■■□□ 2.35
VEGFA-230ENST00000640482 PDE4AP27815 886 aa29.75■■■□□ 2.35
VEGFA-230ENST00000640482 PRAMEF19Q5SWL8 479 aa29.75■■■□□ 2.35
VEGFA-230ENST00000640482 KCTD1Q719H9 257 aa29.75■■■□□ 2.35
VEGFA-230ENST00000640482 DHX30Q7L2E3 1194 aaKnown RBP eCLIP29.75■■■□□ 2.355e-6■□□□□ 9.9
VEGFA-230ENST00000640482 C7orf61Q8IZ16 206 aa29.75■■■□□ 2.35
VEGFA-230ENST00000640482 CHST13Q8NET6 341 aa29.75■■■□□ 2.35
VEGFA-230ENST00000640482 TOP1P11387 765 aaKnown RBP29.74■■■□□ 2.35
VEGFA-230ENST00000640482 DCAF4Q8WV16 495 aa29.74■■■□□ 2.35
VEGFA-230ENST00000640482 MTMR7Q9Y216 660 aa29.74■■■□□ 2.35
VEGFA-230ENST00000640482 ZNFX1Q9P2E3 1918 aaKnown RBP29.74■■■□□ 2.35
VEGFA-230ENST00000640482 DNM1LO00429 736 aa29.73■■■□□ 2.35
VEGFA-230ENST00000640482 TTC22Q5TAA0 569 aa29.73■■■□□ 2.35
VEGFA-230ENST00000640482 TBC1D10CQ8IV04 446 aa29.73■■■□□ 2.35
VEGFA-230ENST00000640482 MSL3Q8N5Y2 521 aaKnown RBP29.73■■■□□ 2.35
VEGFA-230ENST00000640482 ARRDC4Q8NCT1 418 aa29.73■■■□□ 2.35
VEGFA-230ENST00000640482 NT5C2P49902 561 aa29.72■■■□□ 2.35
VEGFA-230ENST00000640482 CCDC96Q2M329 555 aa29.72■■■□□ 2.35
VEGFA-230ENST00000640482 ANKRD35Q8N283 1001 aa29.72■■■□□ 2.35
VEGFA-230ENST00000640482 ESR2Q92731 530 aa29.72■■■□□ 2.35
VEGFA-230ENST00000640482 TMEM47Q9BQJ4 181 aa29.72■■■□□ 2.35
VEGFA-230ENST00000640482 DSCC1Q9BVC3 393 aa29.72■■■□□ 2.35
VEGFA-230ENST00000640482 ALPK3Q96L96 1907 aa29.72■■■□□ 2.35
VEGFA-230ENST00000640482 DNAJC25-GNG10A0A024R161 153 aa29.71■■■□□ 2.35
VEGFA-230ENST00000640482 ANO1Q5XXA6 986 aa29.71■■■□□ 2.35
VEGFA-230ENST00000640482 TTC14Q96N46 770 aa29.71■■■□□ 2.35
VEGFA-230ENST00000640482 CNPY2Q9Y2B0 182 aa29.71■■■□□ 2.35
VEGFA-230ENST00000640482 PLXNA1Q9UIW2 1896 aa29.7■■■□□ 2.35
VEGFA-230ENST00000640482 GSPT1P15170 499 aaKnown RBP29.7■■■□□ 2.35
VEGFA-230ENST00000640482 SENP6Q9GZR1 1112 aaPredicted RBP29.7■■■□□ 2.35
VEGFA-230ENST00000640482 ACAD9Q9H845 621 aa29.7■■■□□ 2.35
VEGFA-230ENST00000640482 CTNNA3Q9UI47 895 aa29.7■■■□□ 2.35
VEGFA-230ENST00000640482 PRR12Q9ULL5 1215 aa29.7■■■□□ 2.35
VEGFA-230ENST00000640482 SYNGAP1Q96PV0 1343 aa29.7■■■□□ 2.34
VEGFA-230ENST00000640482 KBTBD13C9JR72 458 aa29.69■■■□□ 2.34
VEGFA-230ENST00000640482 TKFCQ3LXA3 575 aa29.69■■■□□ 2.34
VEGFA-230ENST00000640482 ZNF467Q7Z7K2 595 aaPredicted RBP29.69■■■□□ 2.34
VEGFA-230ENST00000640482 HOMER2Q9NSB8 354 aa29.69■■■□□ 2.34
VEGFA-230ENST00000640482 RBM27Q9P2N5 1060 aaKnown RBP29.69■■■□□ 2.34
VEGFA-230ENST00000640482 NEDD4P46934 1319 aa29.69■■■□□ 2.34
VEGFA-230ENST00000640482 IMMTQ16891 758 aaKnown RBP29.68■■■□□ 2.34
VEGFA-230ENST00000640482 GJC2Q5T442 439 aaPredicted RBP29.68■■■□□ 2.34
VEGFA-230ENST00000640482 RASGRP2Q7LDG7 609 aa29.68■■■□□ 2.34
VEGFA-230ENST00000640482 AGBL1Q96MI9 1066 aa29.68■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms