RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 SLC5A4Q9NY91 659 aa20.36■□□□□ 0.85
HMGN3-203ENST00000620514 RIPK3Q9Y572 518 aa20.36■□□□□ 0.85
HMGN3-203ENST00000620514 CCDC171Q6TFL3 1326 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 FRMPD3Q5JV73 1810 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 RANBP6O60518 1105 aaKnown RBP20.35■□□□□ 0.85
HMGN3-203ENST00000620514 BMP3P12645 472 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 SLC4A3P48751 1232 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 PRAMEF19Q5SWL8 479 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 SNRNP48Q6IEG0 339 aaKnown RBP20.35■□□□□ 0.85
HMGN3-203ENST00000620514 CPXCR1Q8N123 301 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 TEX13BQ9BXU2 312 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 FEM1BQ9UK73 627 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 STX8Q9UNK0 236 aa20.35■□□□□ 0.85
HMGN3-203ENST00000620514 ZNFX1Q9P2E3 1918 aaKnown RBP20.35■□□□□ 0.85
HMGN3-203ENST00000620514 ORC4O43929 436 aa20.34■□□□□ 0.85
HMGN3-203ENST00000620514 FGRP09769 529 aa20.34■□□□□ 0.85
HMGN3-203ENST00000620514 COL6A1P12109 1028 aa20.34■□□□□ 0.85
HMGN3-203ENST00000620514 HAND2P61296 217 aa20.34■□□□□ 0.85
HMGN3-203ENST00000620514 KCTD2Q14681 263 aa20.34■□□□□ 0.85
HMGN3-203ENST00000620514 RASGRP2Q7LDG7 609 aa20.34■□□□□ 0.85
HMGN3-203ENST00000620514 C7orf61Q8IZ16 206 aa20.34■□□□□ 0.85
HMGN3-203ENST00000620514 RAVER2Q9HCJ3 691 aaKnown RBP20.34■□□□□ 0.85
HMGN3-203ENST00000620514 ISY1Q9ULR0 285 aaKnown RBP20.34■□□□□ 0.85
HMGN3-203ENST00000620514 TMEM232C9JQI7 657 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 ZBED4O75132 1171 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 MCCP23508 829 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 COPB2P35606 906 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 ZNF792Q3KQV3 632 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 RRP12Q5JTH9 1297 aaKnown RBP20.33■□□□□ 0.85
HMGN3-203ENST00000620514 ANO1Q5XXA6 986 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 SLC38A10Q9HBR0 1119 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 TOMM22Q9NS69 142 aa20.33■□□□□ 0.85
HMGN3-203ENST00000620514 MSCO60682 206 aa20.32■□□□□ 0.84
HMGN3-203ENST00000620514 PDE4AP27815 886 aa20.32■□□□□ 0.84
HMGN3-203ENST00000620514 GMCL1Q96IK5 515 aa20.32■□□□□ 0.84
HMGN3-203ENST00000620514 RBM27Q9P2N5 1060 aaKnown RBP20.32■□□□□ 0.84
HMGN3-203ENST00000620514 ZMYND8Q9ULU4 1186 aaPredicted RBP20.32■□□□□ 0.84
HMGN3-203ENST00000620514 CTDP1Q9Y5B0 961 aaPredicted RBP20.32■□□□□ 0.84
HMGN3-203ENST00000620514 ZMYM6O95789 1325 aa20.31■□□□□ 0.84
HMGN3-203ENST00000620514 ATP2A1O14983 1001 aa20.31■□□□□ 0.84
HMGN3-203ENST00000620514 SLC1A4P43007 532 aa20.31■□□□□ 0.84
HMGN3-203ENST00000620514 NOVP48745 357 aa20.31■□□□□ 0.84
HMGN3-203ENST00000620514 PPP4R3BQ5MIZ7 849 aa20.31■□□□□ 0.84
HMGN3-203ENST00000620514 CWC27Q6UX04 472 aaKnown RBP20.31■□□□□ 0.84
HMGN3-203ENST00000620514 MTMR7Q9Y216 660 aa20.31■□□□□ 0.84
HMGN3-203ENST00000620514 SEPT4O43236 478 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 FXR1P51114 621 aaKnown RBP eCLIP20.3■□□□□ 0.84
HMGN3-203ENST00000620514 LRRC26Q2I0M4 334 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 KCTD1Q719H9 257 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 TBC1D10CQ8IV04 446 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 STAG1Q8WVM7 1258 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 TINF2Q9BSI4 451 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 PRO3102Q9H379 93 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 DIAPH3Q9NSV4 1193 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 PCDH10Q9P2E7 1040 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 DIS3Q9Y2L1 958 aaKnown RBP20.3■□□□□ 0.84
HMGN3-203ENST00000620514 TRIOBPQ9H2D6 2365 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 PLXNA1Q9UIW2 1896 aa20.3■□□□□ 0.84
HMGN3-203ENST00000620514 TAL1P17542 331 aaPredicted RBP20.29■□□□□ 0.84
HMGN3-203ENST00000620514 STAT2P52630 851 aa20.29■□□□□ 0.84
HMGN3-203ENST00000620514 IKQ13123 557 aaPredicted RBP20.29■□□□□ 0.84
HMGN3-203ENST00000620514 GJC2Q5T442 439 aaPredicted RBP20.29■□□□□ 0.84
HMGN3-203ENST00000620514 SENP6Q9GZR1 1112 aaPredicted RBP20.29■□□□□ 0.84
HMGN3-203ENST00000620514 SYN1P17600 705 aa20.28■□□□□ 0.84
HMGN3-203ENST00000620514 MFAP1P55081 439 aaKnown RBP20.28■□□□□ 0.84
HMGN3-203ENST00000620514 SNAP25P60880 206 aa20.28■□□□□ 0.84
HMGN3-203ENST00000620514 AKNAD1Q5T1N1 836 aa20.28■□□□□ 0.84
HMGN3-203ENST00000620514 RCSD1Q6JBY9 416 aa20.28■□□□□ 0.84
HMGN3-203ENST00000620514 FAM160B2Q86V87 743 aa20.28■□□□□ 0.84
HMGN3-203ENST00000620514 CHURC1Q8WUH1 139 aa20.28■□□□□ 0.84
HMGN3-203ENST00000620514 DDX11Q96FC9 970 aa20.28■□□□□ 0.84
HMGN3-203ENST00000620514 ZNF536O15090 1300 aa20.27■□□□□ 0.84
HMGN3-203ENST00000620514 DNAJC25-GNG10A0A024R161 153 aa20.27■□□□□ 0.84
HMGN3-203ENST00000620514 OAZ1P54368 228 aa20.27■□□□□ 0.84
HMGN3-203ENST00000620514 AGBL1Q96MI9 1066 aa20.27■□□□□ 0.84
HMGN3-203ENST00000620514 TMEM47Q9BQJ4 181 aa20.27■□□□□ 0.84
HMGN3-203ENST00000620514 HOMER2Q9NSB8 354 aa20.27■□□□□ 0.84
HMGN3-203ENST00000620514 DNM1LO00429 736 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 PLA2G6O60733 806 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 MYCNP04198 464 aaPredicted RBP20.26■□□□□ 0.83
HMGN3-203ENST00000620514 GSPT1P15170 499 aaKnown RBP20.26■□□□□ 0.83
HMGN3-203ENST00000620514 CCDC96Q2M329 555 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 TTBK2Q6IQ55 1244 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 CCDC174Q6PII3 467 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 MFSD6Q6ZSS7 791 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.26■□□□□ 0.83
HMGN3-203ENST00000620514 ANKRD35Q8N283 1001 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 CHST13Q8NET6 341 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 IL25Q9H293 177 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 TCP11L1Q9NUJ3 509 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 PRR12Q9ULL5 1215 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 NEDD4P46934 1319 aa20.26■□□□□ 0.83
HMGN3-203ENST00000620514 HIP1O00291 1037 aa20.25■□□□□ 0.83
HMGN3-203ENST00000620514 ZNF865P0CJ78 1059 aaPredicted RBP20.25■□□□□ 0.83
HMGN3-203ENST00000620514 FDX1P10109 184 aa20.25■□□□□ 0.83
HMGN3-203ENST00000620514 TOP1P11387 765 aaKnown RBP20.25■□□□□ 0.83
HMGN3-203ENST00000620514 ATN1P54259 1190 aaPredicted RBP20.25■□□□□ 0.83
HMGN3-203ENST00000620514 TTC22Q5TAA0 569 aa20.25■□□□□ 0.83
HMGN3-203ENST00000620514 ARRDC4Q8NCT1 418 aa20.25■□□□□ 0.83
HMGN3-203ENST00000620514 DCAF4Q8WV16 495 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms