RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ADCY6O43306 1168 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 ADAMTS4O75173 837 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 PRDM1O75626 825 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 SNAI1O95863 264 aaPredicted RBP8.05□□□□□ -1.12
VPS53-213ENST00000572334 ADCYAP1R1P41586 468 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 IRX5P78411 483 aaPredicted RBP8.05□□□□□ -1.12
VPS53-213ENST00000572334 KLRC3Q07444 240 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 TRIM60Q495X7 471 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 C9orf50Q5SZB4 431 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS53-213ENST00000572334 ARRDC4Q8NCT1 418 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 MKL1Q969V6 931 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 TRIM43Q96BQ3 446 aaPredicted RBP8.05□□□□□ -1.12
VPS53-213ENST00000572334 CEP95Q96GE4 821 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 GUCD1Q96NT3 240 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 GOPCQ9HD26 462 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 PDLIM7Q9NR12 457 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 PHF24Q9UPV7 400 aa8.05□□□□□ -1.12
VPS53-213ENST00000572334 GBF1Q92538 1859 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 PATL2C9JE40 543 aaKnown RBP8.04□□□□□ -1.12
VPS53-213ENST00000572334 PGK1P00558 417 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 SHHQ15465 462 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 CCSAPQ6IQ19 270 aaPredicted RBP8.04□□□□□ -1.12
VPS53-213ENST00000572334 MAMDC4Q6UXC1 1216 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 AMOTL1Q8IY63 956 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 IFNL3Q8IZI9 196 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 KLHDC9Q8NEP7 349 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 FERMT2Q96AC1 680 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 SLF1Q9BQI6 1058 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 KATNBL1Q9H079 304 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 SLC38A10Q9HBR0 1119 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 MTMR4Q9NYA4 1195 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 CLIP2Q9UDT6 1046 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 NRBP1Q9UHY1 535 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 ATP11BQ9Y2G3 1177 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 STXBP5LQ9Y2K9 1186 aa8.04□□□□□ -1.12
VPS53-213ENST00000572334 TTC41PQ6P2S7 1318 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 MYADML2A6NDP7 307 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 KBTBD13C9JR72 458 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 CTAGE5O15320 804 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 ZFYP08048 801 aaPredicted RBP8.03□□□□□ -1.12
VPS53-213ENST00000572334 EPHB4P54760 987 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 TLE2Q04725 743 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 KCTD2Q14681 263 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 ZMYM1Q5SVZ6 1142 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 FAM109BQ6ICB4 259 aaPredicted RBP8.03□□□□□ -1.12
VPS53-213ENST00000572334 SNRNP48Q6IEG0 339 aaKnown RBP8.03□□□□□ -1.12
VPS53-213ENST00000572334 RASGRP2Q7LDG7 609 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 PRPF38AQ8NAV1 312 aaKnown RBP8.03□□□□□ -1.12
VPS53-213ENST00000572334 SLC17A8Q8NDX2 589 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 NEDD1Q8NHV4 660 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 BADQ92934 168 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 DDRGK1Q96HY6 314 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 TEX13BQ9BXU2 312 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 MKNK2Q9HBH9 465 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 XPNPEP3Q9NQH7 507 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 INCENPQ9NQS7 918 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 SLC5A4Q9NY91 659 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS53-213ENST00000572334 ASTN1O14525 1302 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 ZNF536O15090 1300 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 SYNGAP1Q96PV0 1343 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 SYNRGQ9UMZ2 1314 aa8.03□□□□□ -1.12
VPS53-213ENST00000572334 MYH6P13533 1939 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 A0A1W2PQ45 241 aaPredicted RBP8.02□□□□□ -1.13
VPS53-213ENST00000572334 A0A1W2PQY0 241 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 RAD21O60216 631 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 RARBP10826 455 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 GNAT2P19087 354 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 COPB2P35606 906 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 NOVP48745 357 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 TDO2P48775 406 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 CCDC129Q6ZRS4 1044 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 CPXCR1Q8N123 301 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 LRRC47Q8N1G4 583 aaKnown RBP8.02□□□□□ -1.13
VPS53-213ENST00000572334 MSL3Q8N5Y2 521 aaKnown RBP8.02□□□□□ -1.13
VPS53-213ENST00000572334 GMCL1P1Q8NEA9 526 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 LBHD1Q9BQE6 289 aaPredicted RBP8.02□□□□□ -1.13
VPS53-213ENST00000572334 RAVER2Q9HCJ3 691 aaKnown RBP8.02□□□□□ -1.13
VPS53-213ENST00000572334 IL17RBQ9NRM6 502 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 SYNPO2Q9UMS6 1093 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 TTC28Q96AY4 2481 aa8.02□□□□□ -1.13
VPS53-213ENST00000572334 MUC3AQ02505 3323 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 LAMA4Q16363 1823 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 DLL1O00548 723 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 KIAA0355O15063 1070 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 TTLL1O95922 423 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 MYCNP04198 464 aaPredicted RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 AKR1A1P14550 325 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 PTGS1P23219 599 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 OAZ1P54368 228 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 PPARAQ07869 468 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 FAAP100Q0VG06 881 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 VPS53Q5VIR6 699 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 SLFN13Q68D06 897 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 ANKRD33Q7Z3H0 272 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 ZNF467Q7Z7K2 595 aaPredicted RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 ZNF444Q8N0Y2 327 aaPredicted RBP8.01□□□□□ -1.13
VPS53-213ENST00000572334 FAM133AQ8N9E0 248 aa8.01□□□□□ -1.13
VPS53-213ENST00000572334 KIFC2Q96AC6 838 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms