RNA–Protein interactions for RNA: ENST00000562722.1

SF3B3-202, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 881 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-202ENST00000562722 ZFYP08048 801 aaPredicted RBP15.5■□□□□ 0.07
SF3B3-202ENST00000562722 GNAT2P19087 354 aa15.5■□□□□ 0.07
SF3B3-202ENST00000562722 LRRFIP1Q32MZ4 808 aaKnown RBP15.5■□□□□ 0.07
SF3B3-202ENST00000562722 C9orf50Q5SZB4 431 aa15.5■□□□□ 0.07
SF3B3-202ENST00000562722 C1orf53Q5VUE5 145 aa15.5■□□□□ 0.07
SF3B3-202ENST00000562722 FAM109BQ6ICB4 259 aaPredicted RBP15.5■□□□□ 0.07
SF3B3-202ENST00000562722 PRPF38AQ8NAV1 312 aaKnown RBP15.5■□□□□ 0.07
SF3B3-202ENST00000562722 TRIM43Q96BQ3 446 aaPredicted RBP15.5■□□□□ 0.07
SF3B3-202ENST00000562722 GUCD1Q96NT3 240 aa15.5■□□□□ 0.07
SF3B3-202ENST00000562722 COL11A1P12107 1806 aaPredicted RBP15.5■□□□□ 0.07
SF3B3-202ENST00000562722 COL6A3P12111 3177 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 A0A1W2PQ45 241 aaPredicted RBP15.49■□□□□ 0.07
SF3B3-202ENST00000562722 A0A1W2PQY0 241 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 M0R2C6 588 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 CLTBP09497 229 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 ZNF865P0CJ78 1059 aaPredicted RBP15.49■□□□□ 0.07
SF3B3-202ENST00000562722 LRRC47Q8N1G4 583 aaKnown RBP15.49■□□□□ 0.07
SF3B3-202ENST00000562722 NACAP1Q9BZK3 213 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 EPB41L4AQ9HCS5 686 aaPredicted RBP15.49■□□□□ 0.07
SF3B3-202ENST00000562722 FAM184BQ9ULE4 1060 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 TACC3Q9Y6A5 838 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 LTBP2Q14767 1821 aa15.49■□□□□ 0.07
SF3B3-202ENST00000562722 RAG1P15918 1043 aa15.48■□□□□ 0.07
SF3B3-202ENST00000562722 ANKRD35Q8N283 1001 aa15.48■□□□□ 0.07
SF3B3-202ENST00000562722 MSL3Q8N5Y2 521 aaKnown RBP15.48■□□□□ 0.07
SF3B3-202ENST00000562722 CEP95Q96GE4 821 aa15.48■□□□□ 0.07
SF3B3-202ENST00000562722 DCTPP1Q9H773 170 aa15.48■□□□□ 0.07
SF3B3-202ENST00000562722 RAVER2Q9HCJ3 691 aaKnown RBP15.48■□□□□ 0.07
SF3B3-202ENST00000562722 STARD7Q9NQZ5 370 aa15.48■□□□□ 0.07
SF3B3-202ENST00000562722 FEM1BQ9UK73 627 aa15.48■□□□□ 0.07
SF3B3-202ENST00000562722 RIPK3Q9Y572 518 aa15.48■□□□□ 0.07
SF3B3-202ENST00000562722 SYNGAP1Q96PV0 1343 aa15.47■□□□□ 0.07
SF3B3-202ENST00000562722 SYNRGQ9UMZ2 1314 aa15.47■□□□□ 0.07
SF3B3-202ENST00000562722 TTLL1O95922 423 aa15.47■□□□□ 0.07
SF3B3-202ENST00000562722 SLC3A2P08195 630 aaKnown RBP15.47■□□□□ 0.07
SF3B3-202ENST00000562722 TSPY3P0CV98 308 aa15.47■□□□□ 0.07
SF3B3-202ENST00000562722 TSPY8P0CW00 308 aa15.47■□□□□ 0.07
SF3B3-202ENST00000562722 IKQ13123 557 aaPredicted RBP15.47■□□□□ 0.07
SF3B3-202ENST00000562722 NUP133Q8WUM0 1156 aa15.47■□□□□ 0.07
SF3B3-202ENST00000562722 RNPC3Q96LT9 517 aaKnown RBP15.47■□□□□ 0.07
SF3B3-202ENST00000562722 TMEM39AQ9NV64 488 aa15.47■□□□□ 0.07
SF3B3-202ENST00000562722 IGKV6D-41A0A0C4DH26 115 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 DCDC2CA8MYV0 355 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 PATL2C9JE40 543 aaKnown RBP15.46■□□□□ 0.07
SF3B3-202ENST00000562722 ERC2O15083 957 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 ADAMTS4O75173 837 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 SNAI1O95863 264 aaPredicted RBP15.46■□□□□ 0.07
SF3B3-202ENST00000562722 ACLYP53396 1101 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 PDE4BQ07343 736 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 SLFN13Q68D06 897 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.46■□□□□ 0.07
SF3B3-202ENST00000562722 IFNL3Q8IZI9 196 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 CHMP4CQ96CF2 233 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 TSEN34Q9BSV6 310 aaKnown RBP15.46■□□□□ 0.07
SF3B3-202ENST00000562722 FSD1Q9BTV5 496 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 NAPBQ9H115 298 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 SPC25Q9HBM1 224 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 SLC38A10Q9HBR0 1119 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 HOMER2Q9NSB8 354 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 MTMR4Q9NYA4 1195 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 FBXO40Q9UH90 709 aa15.46■□□□□ 0.07
SF3B3-202ENST00000562722 PLXNA1Q9UIW2 1896 aa15.46■□□□□ 0.06
SF3B3-202ENST00000562722 GREB1LQ9C091 1923 aaPredicted RBP15.45■□□□□ 0.06
SF3B3-202ENST00000562722 ZNFX1Q9P2E3 1918 aaKnown RBP15.45■□□□□ 0.06
SF3B3-202ENST00000562722 MOXD2PA6NHM9 499 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 ATP2A1O14983 1001 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 C6orf222P0C671 652 aaPredicted RBP15.45■□□□□ 0.06
SF3B3-202ENST00000562722 BMP3P12645 472 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 ITGB8P26012 769 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 FPGSQ05932 587 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 KCNA10Q16322 511 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 GMCL1P1Q8NEA9 526 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 MKL1Q969V6 931 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 VTI1AQ96AJ9 217 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 CDX2Q99626 313 aaPredicted RBP15.45■□□□□ 0.06
SF3B3-202ENST00000562722 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.45■□□□□ 0.06
SF3B3-202ENST00000562722 DNAH12Q6ZR08 3092 aa15.45■□□□□ 0.06
SF3B3-202ENST00000562722 TTC41PQ6P2S7 1318 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 DNAJC25-GNG10A0A024R161 153 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 TMEM232C9JQI7 657 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 KIAA0355O15063 1070 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 DUSP11O75319 330 aaKnown RBP15.44■□□□□ 0.06
SF3B3-202ENST00000562722 SMAD3P84022 425 aaKnown RBP15.44■□□□□ 0.06
SF3B3-202ENST00000562722 TFAP4Q01664 338 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 ACVR2BQ13705 512 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 MAMDC4Q6UXC1 1216 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 ZNF467Q7Z7K2 595 aaPredicted RBP15.44■□□□□ 0.06
SF3B3-202ENST00000562722 CHST13Q8NET6 341 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 GLT1D1Q96MS3 346 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 SEC62Q99442 399 aaKnown RBP15.44■□□□□ 0.06
SF3B3-202ENST00000562722 SEMA6BQ9H3T3 888 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 SYNPO2Q9UMS6 1093 aa15.44■□□□□ 0.06
SF3B3-202ENST00000562722 MYADML2A6NDP7 307 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 SLC1A4P43007 532 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 STAT2P52630 851 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 OAZ1P54368 228 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 EPHB4P54760 987 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 PPARAQ07869 468 aa15.43■□□□□ 0.06
SF3B3-202ENST00000562722 NOL8Q76FK4 1167 aaKnown RBP15.43■□□□□ 0.06
SF3B3-202ENST00000562722 ARMCX2Q7L311 632 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms