RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SLF2Q8IX21 1173 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 BARHL2Q9NY43 387 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 MTMR4Q9NYA4 1195 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 TOP1P11387 765 aaKnown RBP12.61□□□□□ -0.39
CUX1-212ENST00000547394 SHMT1P34896 483 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 DNAJC18Q9H819 358 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 CDK5RAP2Q96SN8 1893 aa12.61□□□□□ -0.39
CUX1-212ENST00000547394 CCNT1O60563 726 aaKnown RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 UBE2SQ16763 222 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 CCDC96Q2M329 555 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 ZNF579Q8NAF0 562 aaKnown RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 LRRC15Q8TF66 581 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 ANKS1AQ92625 1134 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 OSBPL5Q9H0X9 879 aaPredicted RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 TDRD3Q9H7E2 651 aaKnown RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 ZNF287Q9HBT7 754 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 TCP11L1Q9NUJ3 509 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 SPTLC3Q9NUV7 552 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 INTS13Q9NVM9 706 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 RGS17Q9UGC6 210 aaPredicted RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 COL11A2P13942 1736 aaPredicted RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 CDK11BP21127 795 aaKnown RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 CCZ1BP86790 482 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 CCZ1P86791 482 aaPredicted RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 TPD52L1Q16890 204 aaPredicted RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 NUP88Q99567 741 aaPredicted RBP12.6□□□□□ -0.39
CUX1-212ENST00000547394 MYH1P12882 1939 aa12.6□□□□□ -0.39
CUX1-212ENST00000547394 SMTNL1A8MU46 457 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 SLFN14P0C7P3 912 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 GABPAQ06546 454 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 MORC3Q14149 939 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 HSP90AA2PQ14568 343 aaPredicted RBP12.59□□□□□ -0.39
CUX1-212ENST00000547394 SAMD1Q6SPF0 538 aaPredicted RBP12.59□□□□□ -0.39
CUX1-212ENST00000547394 KLHL34Q8N239 644 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 C4orf32Q8N8J7 132 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 RGS22Q8NE09 1264 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 RRP36Q96EU6 259 aaKnown RBP12.59□□□□□ -0.39
CUX1-212ENST00000547394 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.59□□□□□ -0.39
CUX1-212ENST00000547394 SEC63Q9UGP8 760 aaKnown RBP12.59□□□□□ -0.39
CUX1-212ENST00000547394 PCNTO95613 3336 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 DLEC1Q9Y238 1755 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 RAD17O75943 681 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 CALML3P27482 149 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 CDC25BP30305 580 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 SARSP49591 514 aaKnown RBP12.59□□□□□ -0.39
CUX1-212ENST00000547394 SH3BP5LQ7L8J4 393 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 FERMT2Q96AC1 680 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 BPIFA3Q9BQP9 254 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 CLRN2A0PK11 232 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 M0R2N6 131 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 GNAQP50148 359 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 TPM4P67936 248 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 ZBTB12Q9Y330 459 aaPredicted RBP12.59□□□□□ -0.39
CUX1-212ENST00000547394 SLX4Q8IY92 1834 aa12.59□□□□□ -0.39
CUX1-212ENST00000547394 USP17L10C9JJH3 530 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 PPP1R11O60927 126 aaPredicted RBP12.58□□□□□ -0.4
CUX1-212ENST00000547394 SLC15A2Q16348 729 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 DACT2Q5SW24 774 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 TBCKQ8TEA7 893 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 FAM198AQ9UFP1 575 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 HOOK1Q9UJC3 728 aaKnown RBP12.58□□□□□ -0.4
CUX1-212ENST00000547394 GDAQ9Y2T3 454 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 IKBKBO14920 756 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 TPM3P06753 285 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 JAG1P78504 1218 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 E2F4Q16254 413 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 CTNND2Q9UQB3 1225 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 SCN9AQ15858 1988 aa12.58□□□□□ -0.4
CUX1-212ENST00000547394 LTBP1Q14766 1721 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 YDJCA8MPS7 323 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 PPIP5K2O43314 1243 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 TECP42680 631 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 SOGA3Q5TF21 947 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 TMC4Q7Z404 712 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 POTEDQ86YR6 584 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 CDAN1Q8IWY9 1227 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 SPICE1Q8N0Z3 855 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 TDP2O95551 362 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 STAT6P42226 847 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 TNNI2P48788 182 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 ADKP55263 362 aaKnown RBP12.57□□□□□ -0.4
CUX1-212ENST00000547394 SEPT2Q15019 361 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 PDXDC2PQ6P474 469 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 DTHD1Q6ZMT9 781 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 ADGRF4Q8IZF3 695 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 HPS3Q969F9 1004 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 PRMT6Q96LA8 375 aaPredicted RBP12.57□□□□□ -0.4
CUX1-212ENST00000547394 TMX1Q9H3N1 280 aa12.57□□□□□ -0.4
CUX1-212ENST00000547394 ZNF277Q9NRM2 450 aaPredicted RBP12.57□□□□□ -0.4
CUX1-212ENST00000547394 TCP10L2B9ZVM9 353 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 TEX33O43247 280 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 TTLL1O95922 423 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 TNNT1P13805 278 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 TXKP42681 527 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 CCDC148Q8NFR7 591 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 CPLX3Q8WVH0 158 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 SPZ1Q9BXG8 430 aa12.56□□□□□ -0.4
CUX1-212ENST00000547394 PPP1R1BQ9UD71 204 aaPredicted RBP12.56□□□□□ -0.4
CUX1-212ENST00000547394 RIOK3O14730 519 aaKnown RBP12.56□□□□□ -0.4
CUX1-212ENST00000547394 HLA-DOAP06340 250 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms